Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.5e-247 859.0 424 100.0
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.3e-124 450.7 329 66.0
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 2.8e-124 449.5 360 60.6
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 3.7e-124 449.1 337 64.4
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 6.5e-121 438.3 342 62.0
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.9e-120 436.8 300 68.0
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.9e-120 436.8 330 62.7
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 3.2e-120 436.0 351 60.4
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 4.2e-120 435.6 330 62.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 5.5e-120 435.3 346 60.4
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 7.2e-120 434.9 304 66.1
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.2e-119 434.1 340 61.5
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-119 434.1 325 64.0
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.6e-119 433.7 341 61.6
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 2.1e-119 433.3 301 67.4
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.7e-119 433.0 294 67.3
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 6.1e-119 431.8 376 57.4
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.1e-119 431.8 300 67.7
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 6.1e-119 431.8 358 58.1
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.4e-118 430.6 301 65.4
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.4e-118 430.6 344 62.5
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.4e-118 430.6 352 60.5
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.4e-118 430.6 351 59.3
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.8e-118 430.3 348 60.6
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.8e-118 430.3 356 58.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 2.3e-118 429.9 296 67.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 3.0e-118 429.5 344 60.2
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 3.0e-118 429.5 330 63.0
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.0e-118 429.1 296 67.2
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 5.2e-118 428.7 363 59.2
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 5.2e-118 428.7 291 67.4
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 5.2e-118 428.7 348 60.6
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 6.7e-118 428.3 312 65.4
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.8e-118 427.9 356 57.9
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 8.8e-118 427.9 296 66.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.5e-117 427.2 299 67.6
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.5e-117 427.2 300 65.3
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.0e-117 426.8 296 66.6
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.0e-117 426.8 392 54.8
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 3.3e-117 426.0 348 60.6
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 4.4e-117 425.6 348 59.8
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.7e-117 425.2 301 66.8
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 5.7e-117 425.2 346 60.1
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 5.7e-117 425.2 377 56.0
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.7e-117 425.2 306 64.4
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 7.5e-117 424.9 293 65.9
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 7.5e-117 424.9 320 62.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.3e-116 424.1 293 66.2
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-116 424.1 306 66.0
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-116 424.1 306 66.0
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.8e-116 422.9 296 66.6
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 3.7e-116 422.5 284 68.7
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.8e-116 422.2 284 68.3
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.3e-116 421.8 284 68.3
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.3e-116 421.8 284 68.7
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.3e-116 421.8 284 68.3
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 8.2e-116 421.4 342 59.9
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 8.2e-116 421.4 276 68.1
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.8e-115 420.2 298 65.8
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.8e-115 420.2 306 63.4
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.4e-115 419.9 283 67.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 2.4e-115 419.9 281 67.3
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 3.1e-115 419.5 288 65.3
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 3.1e-115 419.5 288 65.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.1e-115 419.5 356 57.3
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 3.1e-115 419.5 286 68.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.1e-115 419.5 304 65.1
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 4.1e-115 419.1 328 61.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.3e-115 418.7 316 62.3
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.3e-115 418.7 346 59.2
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.1e-115 417.9 381 54.6
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.2e-114 417.5 327 59.9
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.2e-114 417.5 324 61.1
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.6e-114 417.2 294 66.3
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 2.0e-114 416.8 279 67.7
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 2.0e-114 416.8 279 67.7
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 3.5e-114 416.0 304 62.5
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 3.5e-114 416.0 284 66.5
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 5.9e-114 415.2 360 57.8
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.0e-113 414.5 335 57.9
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.3e-113 414.1 283 66.8
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.3e-113 414.1 313 61.7
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.3e-113 414.1 278 66.9
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.2e-113 413.3 408 52.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 2.9e-113 412.9 320 60.9
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 2.9e-113 412.9 283 66.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 5.0e-113 412.1 280 67.5
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 5.0e-113 412.1 280 67.5
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.1e-112 411.0 320 59.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.5e-112 410.6 278 66.5
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 7.2e-112 408.3 342 57.6
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 7.2e-112 408.3 302 62.6
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.7e-111 406.4 318 60.1
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 4.7e-111 405.6 404 52.2
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.0e-110 404.4 298 66.1
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 1.8e-110 403.7 337 57.9
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.8e-110 403.7 338 61.2
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 4.0e-110 402.5 259 72.6
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 4.0e-110 402.5 371 52.6
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.5e-109 400.6 307 62.2
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 3.4e-109 399.4 319 61.4
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 7.5e-109 398.3 333 58.6
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.7e-108 397.1 352 55.4
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 4.1e-107 392.5 329 59.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.6e-106 390.6 347 56.8
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 2.7e-106 389.8 260 68.1
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.5e-106 389.4 274 66.1
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.3e-105 387.5 307 61.9
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.3e-105 386.7 284 63.7
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.0e-105 385.6 341 56.3
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 5.0e-105 385.6 345 54.8
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.1e-104 384.4 262 65.3
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 9.5e-104 381.3 328 56.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 4.9e-100 369.0 443 46.7
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 4.1e-99 365.9 506 41.7
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 5.9e-98 362.1 327 54.7
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.8e-94 348.6 287 59.2
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 6.6e-89 332.0 225 68.0
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 2.6e-85 320.1 214 66.8
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 3.2e-83 313.2 355 47.9
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 8.9e-78 295.0 268 57.8
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.6e-74 284.3 231 55.8
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 3.6e-71 273.1 317 47.0
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-67 261.2 281 48.8
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.2e-59 233.0 144 69.4
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 4.8e-55 219.5 155 63.2
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 6.7e-49 199.1 141 65.2
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.8e-44 183.3 96 78.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 6.5e-36 156.0 172 48.8
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.5e-34 150.2 120 62.5
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 3.0e-33 147.1 117 65.8
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 9.0e-30 135.6 180 39.4
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 7.2e-27 125.9 165 42.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.8e-25 119.0 84 70.2
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.0e-24 117.9 94 60.6
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.0e-20 103.2 146 45.2
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 3.2e-19 100.5 61 70.5
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 9.4e-19 99.0 66 71.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.7e-18 97.4 60 66.7
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 6.7e-17 92.8 72 62.5
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.0e-13 81.3 71 53.5
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.5e-11 75.1 42 73.8
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.2e-11 73.9 48 62.5


User provided reference genes

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