Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-58 228.8 112 100.0
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 8.8e-33 143.7 87 81.6
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 3.3e-32 141.7 87 82.8
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 4.4e-32 141.4 87 81.6
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 5.7e-32 141.0 104 72.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 5.7e-32 141.0 104 72.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 7.4e-32 140.6 73 95.9
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 9.7e-32 140.2 104 71.2
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 9.7e-32 140.2 73 94.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 95.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 93.2
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 1.3e-31 139.8 73 94.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 2.2e-31 139.0 73 93.2
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 2.8e-31 138.7 72 95.8
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 2.8e-31 138.7 73 94.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 3.7e-31 138.3 73 93.2
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 3.7e-31 138.3 72 94.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 3.7e-31 138.3 73 93.2
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 4.8e-31 137.9 73 91.8
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 4.8e-31 137.9 73 93.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 4.8e-31 137.9 73 93.2
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 4.8e-31 137.9 73 93.2
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 91.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 93.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 6.3e-31 137.5 73 91.8
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 8.2e-31 137.1 73 90.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 8.2e-31 137.1 73 91.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 8.2e-31 137.1 73 91.8
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 1.1e-30 136.7 73 91.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 90.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 90.4
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 90.4
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 1.4e-30 136.3 95 74.7
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 90.4
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 91.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 1.4e-30 136.3 73 90.4
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.8e-30 136.0 73 89.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 1.8e-30 136.0 73 91.8
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 3.1e-30 135.2 73 90.4
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 3.1e-30 135.2 73 90.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 3.1e-30 135.2 70 95.7
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.1e-30 135.2 73 93.2
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 3.1e-30 135.2 73 91.8
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 5.3e-30 134.4 73 90.4
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 2.0e-29 132.5 73 87.7
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 2.0e-29 132.5 73 87.7
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-29 132.1 70 92.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 5.9e-29 131.0 73 90.4
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 1.0e-28 130.2 72 90.3
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-28 129.8 73 89.0
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-28 129.0 85 75.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 6.5e-28 127.5 68 91.2
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-27 126.7 68 91.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.1e-27 126.7 68 91.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 1.1e-27 126.7 68 91.2
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 2.7e-26 122.1 71 84.5
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.6e-26 121.7 65 92.3
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 4.7e-26 121.3 79 77.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 4.7e-26 121.3 79 77.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 1.8e-25 119.4 73 82.2
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 4.4e-24 114.8 68 79.4
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 9.7e-24 113.6 71 74.6
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 5.3e-22 107.8 76 73.7
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.2e-17 91.3 59 83.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 5.5e-11 71.2 87 46.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.0e-09 67.0 78 51.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 4.0e-09 65.1 78 50.0
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.4e-06 56.6 38 65.8


User provided reference genes

Program Settings