Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 0.0e+00 1706.0 844 100.0
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 3.2e-297 1025.0 843 63.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.6e-294 1015.4 845 61.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.7e-293 1011.5 844 60.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 6.3e-293 1010.7 844 62.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 1.1e-292 1010.0 843 61.3
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.5e-289 997.7 843 60.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 1.2e-288 996.5 843 60.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 1.2e-288 996.5 846 60.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 2.8e-288 995.3 844 60.8
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.4e-287 993.0 842 61.2
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 5.2e-287 991.1 846 60.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.2e-286 989.9 844 60.4
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 7.5e-286 987.3 844 60.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 4.9e-285 984.6 845 60.8
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.3e-285 983.8 844 60.2
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 8.3e-285 983.8 842 59.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.1e-284 983.4 842 60.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 9.2e-284 980.3 846 59.9
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 2.9e-282 975.3 845 59.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 8.6e-282 973.8 844 59.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 1.6e-280 969.5 843 59.7
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 2.1e-280 969.1 845 59.9
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 4.7e-280 968.0 842 59.5
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 4.7e-280 968.0 844 59.0
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 6.2e-280 967.6 843 59.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.8e-279 966.1 838 58.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.3e-279 965.7 843 59.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.5e-278 963.0 848 59.4
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 4.4e-278 961.4 839 58.5
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 5.8e-278 961.1 846 59.8
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 7.5e-278 960.7 848 59.1
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 9.8e-278 960.3 842 59.3
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 2.9e-277 958.7 845 59.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 2.9e-277 958.7 843 59.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 4.9e-277 958.0 845 59.3
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 6.4e-277 957.6 844 58.3
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.1e-276 956.8 844 59.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.2e-276 955.3 839 59.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 4.1e-276 954.9 844 59.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 7.0e-276 954.1 843 59.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 6.0e-275 951.0 840 56.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 6.0e-275 951.0 826 60.3
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 7.8e-275 950.7 842 58.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.0e-274 950.3 840 58.2
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 1.3e-274 949.9 857 58.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 1.3e-274 949.9 842 58.6
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 3.0e-274 948.7 841 58.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 8.6e-274 947.2 843 58.2
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.1e-273 946.8 842 58.1
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.1e-273 946.8 847 58.6
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 2.5e-273 945.7 846 58.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 7.3e-273 944.1 849 58.4
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 1.2e-272 943.3 842 57.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.2e-272 941.0 873 57.6
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.1e-271 940.3 855 58.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 1.8e-271 939.5 846 58.3
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.0e-270 936.0 840 57.0
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 3.4e-270 935.3 741 64.1
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 9.8e-270 933.7 844 58.2
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 1.3e-269 933.3 879 56.1
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.7e-269 932.9 844 58.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 4.9e-269 931.4 844 58.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 6.4e-269 931.0 847 56.8
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.4e-268 929.1 844 57.2
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 2.1e-267 926.0 843 57.2
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 3.5e-267 925.2 840 57.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.0e-266 922.2 846 56.3
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 5.1e-266 921.4 855 56.6
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.5e-265 919.1 842 56.3
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 3.3e-265 918.7 931 54.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 4.3e-265 918.3 897 55.3
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-263 913.7 843 55.9
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-263 913.7 843 56.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-263 913.7 843 55.9
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.8e-263 912.9 843 57.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 4.0e-263 911.8 780 60.1
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.5e-262 909.8 844 57.2
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 4.4e-262 908.3 844 57.2
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 9.9e-262 907.1 843 56.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 6.4e-261 904.4 850 57.3
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 8.4e-261 904.0 845 57.2
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.4e-260 903.3 947 52.5
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 5.4e-260 901.4 845 55.9
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 5.4e-260 901.4 776 59.5
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 3.5e-259 898.7 912 53.9
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 4.6e-259 898.3 859 55.8
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.3e-258 896.7 845 54.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 6.6e-258 894.4 843 54.8
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 8.6e-258 894.0 853 56.4
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 1.1e-257 893.6 817 56.5
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-256 890.2 844 54.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.2e-256 890.2 844 54.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.4e-255 886.7 846 54.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.4e-255 885.9 858 54.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.8e-255 884.4 840 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.4e-254 882.1 864 54.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 5.8e-254 881.3 773 59.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.2e-253 879.4 841 54.5
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 8.4e-253 877.5 731 61.1
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 7.8e-251 870.9 935 51.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 7.3e-249 864.4 720 60.6
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 7.6e-246 854.4 839 53.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 7.6e-246 854.4 777 56.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.6e-235 820.1 875 51.8
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.5e-233 813.5 741 57.9
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 5.6e-233 811.6 707 58.7
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.6e-232 810.1 720 57.1
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.1e-231 807.4 988 47.2
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.2e-228 795.4 877 49.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 9.3e-228 794.3 811 52.5
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.6e-227 793.5 870 49.2
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.4e-225 784.6 680 61.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 7.6e-222 774.6 861 48.4
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.4e-221 771.2 839 50.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.7e-219 766.1 840 50.0
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.6e-206 723.0 670 55.7
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.1e-199 701.0 746 52.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.5e-196 689.9 527 65.3
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.5e-196 689.9 843 46.6
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.4e-178 630.9 787 47.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.3e-173 613.6 461 67.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.8e-170 604.0 820 44.9
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.6e-166 589.3 539 57.5
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.0e-157 560.1 546 56.2
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 5.1e-149 532.7 442 63.1
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.0e-138 496.5 456 56.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.4e-129 466.8 373 62.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 7.6e-129 465.7 426 58.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.1e-126 457.6 493 52.7
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.1e-123 447.6 469 53.3
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.0e-122 443.4 758 38.1
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.9e-120 436.4 467 48.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-119 435.3 480 49.2
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.3e-107 395.2 361 60.1
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.4e-105 387.1 393 51.7
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.3e-101 374.4 373 56.6
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 2.5e-100 370.9 300 62.3
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 7.7e-97 359.4 293 63.1
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.4e-92 343.6 305 58.7
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.5e-88 329.7 385 44.9
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.5e-84 318.5 268 59.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.8e-67 260.4 197 64.5
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 7.7e-65 253.1 287 44.9
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 3.4e-60 237.7 186 61.8
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.0e-48 199.5 149 66.4
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.0e-48 199.5 176 56.2
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 8.6e-48 196.4 492 31.1
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.3e-47 194.1 247 41.7
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 8.9e-45 186.4 166 52.4
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.1e-37 162.9 142 58.5
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.1e-34 150.2 144 59.0
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 8.4e-27 126.7 72 86.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.0e-24 119.8 115 53.9
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.1e-22 110.2 128 52.3
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-21 109.8 251 32.3
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-21 109.8 97 59.8
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.9e-16 91.3 71 64.8
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 8.1e-14 83.6 57 70.2
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.4e-13 82.0 64 62.5
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.7e-09 68.6 76 46.1
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.5e-07 62.0 107 35.5
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.8e-06 57.8 35 74.3
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.8e-06 57.8 35 74.3
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.8e-06 57.8 35 74.3


User provided reference genes

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