Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16110 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.7e-110 402.9 372 100.0
SEGI_14085 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.0e-93 346.3 236 92.4
SEGI_17214 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 8.9e-90 334.7 239 89.1
SEGI_36083 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.5e-84 317.4 239 86.2
SEGI_39020 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.9e-79 300.4 196 80.1
SEGI_33454 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.4e-63 247.7 159 81.8
SEGI_22916 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.2e-54 218.0 205 59.5
SEGI_39801 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.8e-19 100.5 178 42.7
SEGI_30342 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.7e-19 100.1 168 42.9
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.7e-16 91.3 150 38.0
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.5e-15 87.4 191 31.9
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 4.7e-14 83.2 109 37.6
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 1.4e-13 81.6 202 34.7
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 1.4e-13 81.6 202 34.7
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 8.8e-13 79.0 188 31.9
Lj4A124T57 Lonicera japonica HOM05D003328 ORTHO05D003722 1.5e-12 78.2 180 32.8
vmacro18125 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 1.5e-12 78.2 189 36.0
Aa31LG11G13800 Aethionema arabicum HOM05D003328 ORTHO05D003722 2.0e-12 77.8 190 32.1
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 3.3e-12 77.0 190 32.6
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 4.4e-12 76.6 190 33.7
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 1.3e-11 75.1 185 33.5
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 1.7e-11 74.7 196 32.7
CiPaw.05G105500 Carya illinoinensis HOM05D003105 ORTHO05D003471 2.2e-11 74.3 200 28.0
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 2.2e-11 74.3 185 33.5
Sed0000331 Sechium edule HOM05D003328 ORTHO05D003722 2.2e-11 74.3 132 37.1
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 2.8e-11 73.9 177 33.9
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 2.8e-11 73.9 196 33.2
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 4.8e-11 73.2 191 33.0
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 4.8e-11 73.2 185 31.9
Sopen02g034040 Solanum pennellii HOM05D003328 ORTHO05D003722 4.8e-11 73.2 180 32.2
CAN.G497.56 Capsicum annuum HOM05D003328 ORTHO05D003722 6.3e-11 72.8 177 33.3
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 6.3e-11 72.8 150 32.0
Lj2g0016580 Lotus japonicus HOM05D003328 ORTHO05D003722 6.3e-11 72.8 183 31.1
QL03p051089 Quercus lobata HOM05D003105 ORTHO05D003471 8.2e-11 72.4 198 28.8
Gohir.A03G150400 Gossypium hirsutum HOM05D003105 ORTHO05D003471 1.1e-10 72.0 162 29.0
Thecc.04G107000 Theobroma cacao HOM05D003328 ORTHO05D003722 1.1e-10 72.0 172 32.6
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 1.4e-10 71.6 180 32.2
Duzib138G1365 Durio zibethinus HOM05D003328 ORTHO05D003722 1.8e-10 71.2 157 33.8
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 2.4e-10 70.9 157 33.8
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 2.4e-10 70.9 180 31.7
DCAR_011012 Daucus carota HOM05D003328 ORTHO05D003722 3.1e-10 70.5 166 31.9
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 3.1e-10 70.5 189 31.2
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 3.1e-10 70.5 190 29.5
Oeu031836.1 Olea europaea HOM05D003328 ORTHO05D003722 3.1e-10 70.5 163 34.4
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 4.1e-10 70.1 158 33.5
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 4.1e-10 70.1 181 33.1
TWI60G0197 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 4.1e-10 70.1 151 35.8
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 4.1e-10 70.1 135 37.8
Atru.chr11.2383 Acer truncatum HOM05D003105 ORTHO05D003471 5.3e-10 69.7 166 27.1
Atru.chr8.639 Acer truncatum HOM05D003328 ORTHO05D003722 5.3e-10 69.7 176 30.7
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 5.3e-10 69.7 158 33.5
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 5.3e-10 69.7 197 33.0
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 7.0e-10 69.3 176 33.0
Sabra01G0043400 Salix brachista HOM05D003105 ORTHO05D003471 7.0e-10 69.3 200 29.0
TWI34G1159 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 7.0e-10 69.3 175 30.9
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 9.1e-10 68.9 156 33.3
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 9.1e-10 68.9 155 32.9
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 9.1e-10 68.9 186 32.3
Atru.chr8.633 Acer truncatum HOM05D003328 ORTHO05D003722 1.2e-09 68.6 157 32.5
ECA232G1221 Erigeron canadensis HOM05D003328 ORTHO05D003722 1.2e-09 68.6 181 30.4
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 1.2e-09 68.6 177 32.8
Prupe.3G309900 Prunus persica HOM05D003105 ORTHO05D003471 1.2e-09 68.6 167 28.1
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 1.2e-09 68.6 205 30.2
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 1.6e-09 68.2 185 32.4
CsaV3_5G038710 Cucumis sativus L. HOM05D003328 ORTHO05D003722 2.0e-09 67.8 190 32.1
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 2.0e-09 67.8 162 30.9
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 2.7e-09 67.4 145 33.1
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 2.7e-09 67.4 203 30.5
AUR62028883 Chenopodium quinoa HOM05D003105 ORTHO05D003471 2.7e-09 67.4 158 28.5
Duzib211G0567 Durio zibethinus HOM05D003328 ORTHO05D003722 2.7e-09 67.4 146 34.9
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 3.5e-09 67.0 162 31.5
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.5e-09 67.0 186 30.1
SGA_v2.0_scaffold148G36453 Striga asiatica HOM05D003328 ORTHO05D003722 3.5e-09 67.0 200 28.0
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 4.5e-09 66.6 145 32.4
MELO3C022338.2 Cucumis melo HOM05D003105 ORTHO05D003471 4.5e-09 66.6 188 25.5
Potri.001G060500 Populus trichocarpa HOM05D003105 ORTHO05D003471 4.5e-09 66.6 203 27.6
PGSC0003DMG400001028 Solanum tuberosum HOM05D003328 ORTHO05D003722 4.5e-09 66.6 185 28.6
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 5.9e-09 66.2 192 32.8
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 5.9e-09 66.2 188 33.0
Cfa009403 Carpinus fangiana HOM05D003105 ORTHO05D003471 5.9e-09 66.2 195 28.2
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 5.9e-09 66.2 156 35.3
MD17G1011000 Malus domestica HOM05D003105 ORTHO05D003471 5.9e-09 66.2 166 25.9
Oeu062183.1 Olea europaea HOM05D003328 ORTHO05D003722 5.9e-09 66.2 184 31.5
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 7.7e-09 65.9 184 29.9
Duzib147G0512 Durio zibethinus HOM05D003105 ORTHO05D003471 7.7e-09 65.9 170 30.6
Migut.K00883 Erythranthe guttata HOM05D003328 ORTHO05D003722 7.7e-09 65.9 190 30.0
Gorai.007G177000 Gossypium raimondii HOM05D003328 ORTHO05D003722 7.7e-09 65.9 155 32.9
Medtr6g015995 Medicago truncatula HOM05D003328 ORTHO05D003722 7.7e-09 65.9 130 35.4
Nitab4.5_0001434g0120 Nicotiana tabacum HOM05D003328 ORTHO05D003722 7.7e-09 65.9 153 32.0
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 7.7e-09 65.9 173 30.1
Aqoxy1G03531 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 1.0e-08 65.5 191 30.4
Duzib138G1918 Durio zibethinus HOM05D003328 ORTHO05D003722 1.0e-08 65.5 147 34.0
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.0e-08 65.5 192 29.2
MD16G1124400 Malus domestica HOM05D003105 ORTHO05D003471 1.0e-08 65.5 158 25.9
Atru.chr8.632 Acer truncatum HOM05D003328 ORTHO05D003722 1.3e-08 65.1 157 32.5
AUR62005672 Chenopodium quinoa HOM05D003105 ORTHO05D003471 1.7e-08 64.7 157 28.7
Lsat_1_v5_gn_4_173421 Lactuca sativa HOM05D003328 ORTHO05D003722 1.7e-08 64.7 161 31.1
MD09G1074600 Malus domestica HOM05D003328 ORTHO05D003722 2.2e-08 64.3 145 34.5
HPP92_024462 Vanilla planifolia HOM05D003105 ORTHO05D003471 2.2e-08 64.3 203 26.1
BcaNung02204 Brassica carinata HOM05D003328 ORTHO05D003722 2.9e-08 63.9 168 32.7
FAN05G0575 Fragaria x ananassa HOM05D003328 ORTHO05D003722 2.9e-08 63.9 159 30.2
Gohir.A07G179500 Gossypium hirsutum HOM05D003328 ORTHO05D003722 2.9e-08 63.9 154 32.5
Gohir.D11G166000 Gossypium hirsutum HOM05D003328 ORTHO05D003722 2.9e-08 63.9 164 33.5
Psat3g169000 Pisum sativum HOM05D003105 ORTHO05D003471 2.9e-08 63.9 165 26.7
Sc11g0000300 Simmondsia chinensis HOM05D003105 ORTHO05D003471 2.9e-08 63.9 166 26.5
Zm00001eb408940 Zea mays HOM05D003105 ORTHO05D003471 2.9e-08 63.9 160 30.0
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 3.8e-08 63.5 162 34.0
MELO3C022051.2 Cucumis melo HOM05D003328 ORTHO05D003722 3.8e-08 63.5 140 35.7
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 3.8e-08 63.5 129 34.9
HanXRQChr17g0551651 Helianthus annuus HOM05D003105 ORTHO05D003471 3.8e-08 63.5 131 29.8
Cc11_g17340 Coffea canephora HOM05D003105 ORTHO05D003471 5.0e-08 63.2 176 26.7
PSO063G5324 Papaver somniferum HOM05D003328 ORTHO05D003722 5.0e-08 63.2 170 27.6
Thecc.04G041300 Theobroma cacao HOM05D003105 ORTHO05D003471 5.0e-08 63.2 157 29.3
MSTRG.2972 Avicennia marina HOM05D003328 ORTHO05D003722 6.5e-08 62.8 161 31.7
Duzib264G1204 Durio zibethinus HOM05D003105 ORTHO05D003471 6.5e-08 62.8 157 28.7
Lsat_1_v5_gn_0_3380 Lactuca sativa HOM05D003105 ORTHO05D003471 6.5e-08 62.8 134 30.6
TPR.G15938 Trifolium pratense HOM05D003328 ORTHO05D003722 6.5e-08 62.8 130 34.6
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 6.5e-08 62.8 130 33.8
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 8.5e-08 62.4 210 27.1
Ciclev10016966m.g Citrus clementina HOM05D003105 ORTHO05D003471 8.5e-08 62.4 139 32.4
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 8.5e-08 62.4 168 29.8
Sed0005495 Sechium edule HOM05D003328 ORTHO05D003722 8.5e-08 62.4 186 29.6
TWI18G0471 Tripterygium wilfordii HOM05D003105 ORTHO05D003471 8.5e-08 62.4 154 26.0
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 1.1e-07 62.0 155 32.3
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 1.1e-07 62.0 210 28.1
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 1.1e-07 62.0 192 28.1
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 1.1e-07 62.0 155 32.3
CiPaw.04G052000 Carya illinoinensis HOM05D003328 ORTHO05D003722 1.1e-07 62.0 128 33.6
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 1.5e-07 61.6 199 29.6
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 1.9e-07 61.2 169 32.0
ECA234G0704 Erigeron canadensis HOM05D003105 ORTHO05D003471 1.9e-07 61.2 167 26.3
HanXRQChr14g0452501 Helianthus annuus HOM05D003328 ORTHO05D003722 1.9e-07 61.2 165 30.3
Lalb_Chr02g0158801 Lupinus albus HOM05D003328 ORTHO05D003722 1.9e-07 61.2 187 29.4
Phvul.004G042600 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 1.9e-07 61.2 132 33.3
Sabra03G0122500 Salix brachista HOM05D003105 ORTHO05D003471 1.9e-07 61.2 203 28.1
Gohir.D07G239000 Gossypium hirsutum HOM05D003105 ORTHO05D003471 2.5e-07 60.8 157 28.0
SEGI_34452 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.5e-07 60.8 174 33.3
C02p07970 Brassica napus HOM05D003328 ORTHO05D003722 3.2e-07 60.5 155 31.6
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 3.2e-07 60.5 189 28.6
Haze_14905 Corylus avellana HOM05D003105 ORTHO05D003471 3.2e-07 60.5 162 30.2
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 3.2e-07 60.5 195 30.8
TWI34G0266 Tripterygium wilfordii HOM05D003105 ORTHO05D003471 3.2e-07 60.5 156 28.2
TWI34G0640 Tripterygium wilfordii HOM05D003105 ORTHO05D003471 3.2e-07 60.5 156 28.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.2e-07 60.1 162 29.0
Gohir.D07G186300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 4.2e-07 60.1 138 32.6
Gorai.001G275000 Gossypium raimondii HOM05D003105 ORTHO05D003471 4.2e-07 60.1 157 28.0
Medtr7g027020 Medicago truncatula HOM05D003105 ORTHO05D003471 4.2e-07 60.1 165 24.8
SalBow1G5190 Salvia bowleyana HOM05D003328 ORTHO05D003722 4.2e-07 60.1 107 39.3
Aqoxy3G03729 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 5.5e-07 59.7 191 28.8
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 5.5e-07 59.7 180 30.6
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 5.5e-07 59.7 158 28.5
Nitab4.5_0000154g0140 Nicotiana tabacum HOM05D003328 ORTHO05D003722 5.5e-07 59.7 104 37.5
Hund25487 Selenicereus undatus HOM05D003105 ORTHO05D003471 5.5e-07 59.7 152 25.7
Gorai.001G206900 Gossypium raimondii HOM05D003328 ORTHO05D003722 7.2e-07 59.3 138 32.6
Nn3g17524 Nelumbo nucifera HOM05D003328 ORTHO05D003722 7.2e-07 59.3 143 32.2
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 7.2e-07 59.3 156 32.1
SEGI_33280 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 7.2e-07 59.3 176 33.5
TAR629G1599 Trochodendron aralioides HOM05D003105 ORTHO05D003471 7.2e-07 59.3 156 27.6
VMungo0464G0668 Vigna mungo HOM05D003328 ORTHO05D003722 7.2e-07 59.3 132 32.6
CANSAT64G0009 Cannabis sativa HOM05D003105 ORTHO05D003471 9.4e-07 58.9 160 25.6
Eucgr.H03355 Eucalyptus grandis HOM05D003105 ORTHO05D003471 9.4e-07 58.9 137 29.2
SEGI_36274 Sequoiadendron giganteum HOM05D003105 ORTHO05D003471 9.4e-07 58.9 165 28.5
AUR62023157 Chenopodium quinoa HOM05D003328 ORTHO05D003722 1.2e-06 58.5 135 32.6
Glyma.16G053200 Glycine max HOM05D003105 ORTHO05D003471 1.2e-06 58.5 133 26.3
Hma1.2p1_0525F.1_g172590 Hydrangea macrophylla HOM05D003105 ORTHO05D003471 1.2e-06 58.5 156 26.9
MD09G1075000 Malus domestica HOM05D003328 ORTHO05D003722 1.2e-06 58.5 135 32.6
Sed0002688 Sechium edule HOM05D003328 ORTHO05D003722 1.2e-06 58.5 152 30.3
COL.COLO4_13299 Corchorus olitorius HOM05D003105 ORTHO05D003471 1.6e-06 58.2 159 30.2
Glyma.19G096200 Glycine max HOM05D003105 ORTHO05D003471 1.6e-06 58.2 133 26.3
Manes.11G083400 Manihot esculenta HOM05D003105 ORTHO05D003471 1.6e-06 58.2 156 27.6
Potri.001G326200 Populus trichocarpa HOM05D003105 ORTHO05D003471 1.6e-06 58.2 160 25.0
Lsat_1_v5_gn_4_2141 Lactuca sativa HOM05D003105 ORTHO05D003471 2.1e-06 57.8 196 24.5
AUR62009478 Chenopodium quinoa HOM05D003328 ORTHO05D003722 2.7e-06 57.4 155 29.0
Ciclev10032019m.g Citrus clementina HOM05D003105 ORTHO05D003471 2.7e-06 57.4 178 25.8
Rhsim10G0004200 Rhododendron simsii HOM05D003105 ORTHO05D003471 2.7e-06 57.4 157 28.0
TPR.G8570 Trifolium pratense HOM05D003105 ORTHO05D003471 2.7e-06 57.4 133 26.3
BcaC04g18938 Brassica carinata HOM05D003328 ORTHO05D003722 3.6e-06 57.0 186 27.4
Lj1g0015821 Lotus japonicus HOM05D003105 ORTHO05D003471 3.6e-06 57.0 147 25.2
SalBow1G2513 Salvia bowleyana HOM05D003328 ORTHO05D003722 3.6e-06 57.0 175 30.3
VMungo1383G2771 Vigna mungo HOM05D003105 ORTHO05D003471 4.7e-06 56.6 133 25.6
DCAR_025455 Daucus carota HOM05D003328 ORTHO05D003722 6.1e-06 56.2 140 30.7
Potri.003G167100 Populus trichocarpa HOM05D003105 ORTHO05D003471 6.1e-06 56.2 190 26.8
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 8.0e-06 55.8 111 33.3
Os09g0508200 Oryza sativa ssp. japonica HOM05D003105 ORTHO05D003471 8.0e-06 55.8 173 27.7
Potri.017G068400 Populus trichocarpa HOM05D003105 ORTHO05D003471 8.0e-06 55.8 159 26.4
SMO356G0350 Selaginella moellendorffii HOM05D003328 ORTHO05D003722 8.0e-06 55.8 179 33.0


User provided reference genes

Program Settings