Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 3.4e-46 188.0 94 100.0
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 3.5e-27 124.8 71 84.5
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 3.3e-17 91.7 62 66.1
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 7.4e-17 90.5 84 53.6
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.3e-16 89.7 62 67.7
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.3e-16 89.7 62 67.7
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.6e-16 89.4 64 62.5
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.8e-16 88.6 61 60.7
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 2.8e-16 88.6 59 66.1
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.7e-16 88.2 62 64.5
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.7e-16 88.2 63 60.3
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 4.8e-16 87.8 63 63.5
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 8.2e-16 87.0 62 64.5
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 1.1e-15 86.7 58 62.1
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.1e-15 86.7 62 62.9
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.1e-15 86.7 62 61.3
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 1.4e-15 86.3 62 61.3
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.4e-15 86.3 65 55.4
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.8e-15 85.9 62 61.3
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 1.8e-15 85.9 62 61.3
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 2.4e-15 85.5 60 65.0
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.4e-15 85.5 62 64.5
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 3.1e-15 85.1 63 61.9
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 3.1e-15 85.1 62 62.9
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.1e-15 85.1 63 63.5
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 4.1e-15 84.7 62 62.9
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 4.1e-15 84.7 62 62.9
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 4.1e-15 84.7 62 61.3
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 4.1e-15 84.7 62 62.9
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 5.3e-15 84.3 65 58.5
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 5.3e-15 84.3 65 58.5
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 5.3e-15 84.3 62 56.5
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 5.3e-15 84.3 62 56.5
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 6.9e-15 84.0 63 58.7
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 9.0e-15 83.6 62 61.3
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 9.0e-15 83.6 68 52.9
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.2e-14 83.2 62 61.3
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 1.2e-14 83.2 62 56.5
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.2e-14 83.2 62 54.8
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.5e-14 82.8 62 59.7
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 1.5e-14 82.8 62 58.1
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 1.5e-14 82.8 62 62.9
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 1.5e-14 82.8 62 61.3
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 1.5e-14 82.8 62 62.9
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 2.0e-14 82.4 63 61.9
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 2.0e-14 82.4 62 61.3
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.0e-14 82.4 64 62.5
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 2.6e-14 82.0 62 58.1
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.6e-14 82.0 62 59.7
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 2.6e-14 82.0 62 62.9
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 2.6e-14 82.0 62 59.7
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.4e-14 81.6 62 59.7
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.4e-14 81.6 62 59.7
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.4e-14 81.6 62 59.7
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 3.4e-14 81.6 63 60.3
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 4.5e-14 81.3 61 59.0
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 4.5e-14 81.3 63 60.3
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 4.5e-14 81.3 62 59.7
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 4.5e-14 81.3 62 61.3
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 5.9e-14 80.9 62 59.7
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 5.9e-14 80.9 62 59.7
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 5.9e-14 80.9 62 61.3
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 7.7e-14 80.5 63 54.0
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 7.7e-14 80.5 62 56.5
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.0e-13 80.1 62 59.7
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 1.0e-13 80.1 63 61.9
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 1.0e-13 80.1 62 59.7
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 1.3e-13 79.7 66 56.1
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.3e-13 79.7 62 53.2
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.3e-13 79.7 62 51.6
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.3e-13 79.7 59 55.9
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 1.7e-13 79.3 62 58.1
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 1.7e-13 79.3 62 56.5
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 2.2e-13 79.0 62 54.8
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 2.2e-13 79.0 62 51.6
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.2e-13 79.0 60 63.3
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.2e-13 79.0 60 63.3
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.9e-13 78.6 62 56.5
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 3.8e-13 78.2 62 56.5
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 3.8e-13 78.2 62 56.5
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 3.8e-13 78.2 62 59.7
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 5.0e-13 77.8 62 53.2
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 5.0e-13 77.8 63 50.8
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 5.0e-13 77.8 64 60.9
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 5.0e-13 77.8 64 60.9
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 5.0e-13 77.8 64 60.9
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 5.0e-13 77.8 62 51.6
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 1.1e-12 76.6 62 53.2
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 1.4e-12 76.3 62 51.6
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 1.4e-12 76.3 62 51.6
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 1.9e-12 75.9 64 54.7
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 3.2e-12 75.1 62 48.4
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.2e-12 75.1 62 53.2
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 4.2e-12 74.7 62 53.2
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 4.2e-12 74.7 62 53.2
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 5.5e-12 74.3 63 49.2
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 7.2e-12 73.9 62 50.0
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 9.4e-12 73.6 62 51.6
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.6e-11 72.8 62 54.8
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 3.6e-11 71.6 62 53.2
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 4.6e-11 71.2 83 44.6
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 6.1e-11 70.9 63 50.8
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 6.1e-11 70.9 63 52.4
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 7.9e-11 70.5 61 47.5
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 1.4e-10 69.7 69 46.4
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.8e-10 69.3 63 50.8
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.8e-10 69.3 68 44.1
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 2.3e-10 68.9 69 43.5
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 3.0e-10 68.6 71 46.5
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 3.0e-10 68.6 69 46.4
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 3.0e-10 68.6 62 51.6
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 3.9e-10 68.2 59 54.2
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 3.9e-10 68.2 62 53.2
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.9e-10 68.2 62 53.2
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 3.9e-10 68.2 62 51.6
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 5.1e-10 67.8 44 59.1
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 5.1e-10 67.8 60 51.7
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 5.1e-10 67.8 44 61.4
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.7e-10 67.4 60 46.7
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 8.8e-10 67.0 60 48.3
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.1e-09 66.6 63 49.2
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.1e-09 66.6 60 50.0
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 1.5e-09 66.2 69 43.5
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.0e-09 65.9 62 50.0
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 2.0e-09 65.9 44 61.4
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 2.5e-09 65.5 59 49.2
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 2.5e-09 65.5 62 50.0
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.5e-09 65.5 63 49.2
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 3.3e-09 65.1 78 41.0
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 3.3e-09 65.1 78 41.0
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 3.3e-09 65.1 46 58.7
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 4.3e-09 64.7 63 47.6
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 4.3e-09 64.7 52 61.5
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 7.4e-09 63.9 62 48.4
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.3e-08 63.2 60 48.3
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.7e-08 62.8 62 48.4
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.2e-08 62.4 57 50.9
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.8e-08 62.0 62 48.4
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.8e-08 61.2 62 46.8
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 9.1e-07 57.0 35 60.0
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.2e-06 56.6 33 66.7
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.2e-06 56.6 35 60.0
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.5e-06 56.2 44 54.5
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.0e-06 55.8 35 60.0
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.0e-06 55.8 35 60.0
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 2.6e-06 55.5 62 43.5
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 2.6e-06 55.5 59 39.0
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 3.4e-06 55.1 84 38.1
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 3.4e-06 55.1 66 43.9
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 4.5e-06 54.7 35 60.0
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 4.5e-06 54.7 78 35.9
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 4.5e-06 54.7 35 57.1
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 5.9e-06 54.3 46 54.3
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 5.9e-06 54.3 53 45.3
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 7.7e-06 53.9 44 43.2


User provided reference genes

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