Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.2e-218 761.5 404 100.0
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.7e-155 553.1 303 100.0
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 5.5e-53 212.6 222 52.7
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.1e-52 210.7 221 53.8
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.6e-52 209.9 222 54.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.6e-52 209.9 228 52.6
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.6e-52 209.9 228 52.6
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.1e-52 209.1 228 53.1
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.0e-51 208.4 230 52.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.4e-51 208.0 226 52.2
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.8e-51 207.6 228 53.5
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 2.3e-51 207.2 239 50.6
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 4.0e-51 206.5 222 52.7
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.0e-51 206.5 228 52.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 5.2e-51 206.1 227 53.3
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 8.9e-51 205.3 259 48.3
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-50 204.9 304 44.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.5e-50 204.5 212 53.3
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.5e-50 204.5 230 50.9
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.0e-50 204.1 212 52.8
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.0e-50 204.1 224 50.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.4e-50 203.4 218 50.9
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.4e-50 203.4 216 53.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.4e-50 203.4 211 53.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 3.4e-50 203.4 240 48.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 3.4e-50 203.4 249 49.0
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.4e-50 203.0 230 50.4
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 7.5e-50 202.2 211 52.6
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.3e-49 201.4 224 50.9
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.7e-49 201.1 225 52.0
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.9e-49 199.5 213 52.6
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.9e-49 199.5 240 49.6
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 6.3e-49 199.1 240 48.3
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 8.3e-49 198.7 217 53.0
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 8.3e-49 198.7 207 51.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.1e-48 198.4 295 43.1
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.8e-48 197.6 288 42.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.8e-48 197.6 310 43.2
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 3.1e-48 196.8 211 53.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 5.4e-48 196.1 206 50.5
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 5.4e-48 196.1 251 47.8
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 5.4e-48 196.1 276 43.5
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 7.0e-48 195.7 228 49.6
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 7.0e-48 195.7 233 48.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 7.0e-48 195.7 233 48.1
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.2e-47 194.9 249 46.2
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.2e-47 194.9 328 37.8
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.6e-47 194.5 286 43.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.7e-47 193.7 237 49.4
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.5e-47 193.4 229 49.8
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.5e-47 193.4 229 50.7
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 4.5e-47 193.0 231 50.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 5.9e-47 192.6 219 49.3
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 7.8e-47 192.2 229 49.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 7.8e-47 192.2 232 49.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.0e-46 191.8 207 48.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.7e-46 191.0 205 50.2
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.3e-46 190.7 206 51.5
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.3e-46 190.7 300 41.0
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 2.3e-46 190.7 225 46.7
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 3.8e-46 189.9 334 42.5
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.8e-46 189.9 223 47.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.0e-46 189.5 248 46.0
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 6.6e-46 189.1 206 51.0
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.5e-45 188.0 229 48.5
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.9e-45 187.6 225 46.7
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.3e-45 186.8 227 46.7
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.3e-45 186.8 227 46.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 9.5e-45 185.3 301 41.2
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 9.5e-45 185.3 338 38.8
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 9.5e-45 185.3 231 47.6
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.6e-44 183.3 249 45.4
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.6e-44 183.3 208 48.1
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.0e-43 181.8 212 50.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.4e-43 181.4 280 43.2
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 3.0e-43 180.3 159 56.0
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.0e-43 179.9 208 49.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 8.9e-43 178.7 332 37.0
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 8.9e-43 178.7 229 46.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.4e-42 176.8 295 39.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.4e-42 176.4 146 61.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 5.8e-42 176.0 216 48.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 8.3e-41 172.2 219 47.5
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 3.5e-39 166.8 313 38.3
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.6e-39 166.4 271 38.7
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.5e-37 160.6 225 44.9
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 9.5e-37 158.7 273 39.6
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.5e-37 158.7 215 45.6
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.8e-36 157.1 130 58.5
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.6e-36 156.8 299 38.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 6.2e-36 156.0 195 46.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.1e-35 155.2 157 51.6
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 8.9e-35 152.1 207 44.9
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.6e-34 150.6 152 53.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.4e-34 150.2 152 52.0
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 3.4e-34 150.2 226 42.0
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 9.8e-34 148.7 152 52.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 9.8e-34 148.7 152 52.0
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.9e-33 147.1 155 52.3
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.1e-32 145.2 166 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.4e-32 142.9 155 50.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.5e-31 140.2 219 40.6
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 7.8e-31 139.0 148 51.4
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.7e-30 137.9 228 39.5
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.8e-28 130.6 207 41.5
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.0e-26 124.4 225 39.1
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 2.6e-26 124.0 241 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.8e-26 122.9 162 42.6
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.3e-25 121.7 228 36.8
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.7e-25 121.3 153 49.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.2e-25 120.9 126 49.2
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 9.2e-24 115.5 91 60.4
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-23 115.2 228 38.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.0e-23 112.8 136 45.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 9.5e-21 105.5 138 44.2
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.4e-19 100.9 128 45.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.5e-18 98.2 89 58.4
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.4e-18 96.7 83 60.2
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 9.9e-18 95.5 77 57.1
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.2e-16 90.5 240 34.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 4.3e-13 80.1 125 37.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.6e-13 79.7 169 36.1
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.2e-12 78.6 235 32.3
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.1e-11 73.9 231 30.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 4.0e-11 73.6 68 55.9
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.2e-10 72.0 124 36.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-09 68.2 147 36.7
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-08 65.5 45 62.2
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.4e-08 64.3 116 34.5
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.4e-08 64.3 40 77.5
SEGI_16677 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.2e-08 63.9 35 85.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 5.4e-08 63.2 237 29.1
SEGI_09056 Sequoiadendron giganteum HOM05D000397 ORTHO05D000492 5.4e-08 63.2 31 90.3
SEGI_15393 Sequoiadendron giganteum HOM05D002640 ORTHO05D003231 5.4e-08 63.2 49 63.3
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 1.2e-07 62.0 36 80.6
SEGI_01476 Sequoiadendron giganteum HOM05D004921 ORTHO05D002858 2.1e-07 61.2 38 76.3
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-07 60.8 87 43.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.0e-06 58.9 240 29.6
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 2.3e-06 57.8 55 54.5
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.3e-06 57.8 56 50.0
SEGI_09521 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 3.0e-06 57.4 41 61.0
SEGI_38304 Sequoiadendron giganteum HOM05D000363 ORTHO05D000236 3.0e-06 57.4 31 83.9
SEGI_09361 Sequoiadendron giganteum HOM05D000590 ORTHO05D001713 5.1e-06 56.6 38 68.4
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 8.7e-06 55.8 55 47.3


User provided reference genes

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