Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15939 Sequoiadendron giganteum HOM05D003219 ORTHO05D026562 5.6e-270 933.7 483 100.0
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 3.0e-194 682.2 358 100.0
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 3.9e-146 522.3 368 70.1
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 6.2e-144 515.0 361 73.1
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 1.1e-143 514.2 356 74.4
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 1.4e-143 513.8 361 73.1
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 2.4e-143 513.1 359 74.4
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 1.2e-142 510.8 355 75.5
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 2.6e-142 509.6 357 73.9
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 1.3e-141 507.3 357 74.5
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 1.3e-141 507.3 357 73.7
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 1.7e-141 506.9 357 73.9
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 2.2e-141 506.5 371 68.7
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 2.2e-141 506.5 357 69.5
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 6.5e-141 505.0 356 72.8
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 1.1e-140 504.2 356 72.8
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 1.4e-140 503.8 357 73.9
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 1.4e-140 503.8 357 73.9
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 2.5e-140 503.1 356 74.2
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 3.2e-140 502.7 357 71.4
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 5.5e-140 501.9 357 74.2
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 5.5e-140 501.9 355 74.4
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 7.1e-140 501.5 357 73.7
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 7.1e-140 501.5 360 73.6
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 7.1e-140 501.5 357 73.7
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 9.3e-140 501.1 356 74.4
Nn2g13017 Nelumbo nucifera HOM05D003219 ORTHO05D005190 1.2e-139 500.7 361 73.7
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 1.2e-139 500.7 356 73.9
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.6e-139 500.4 368 67.1
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 1.6e-139 500.4 357 73.9
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 1.6e-139 500.4 359 73.5
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 1.6e-139 500.4 357 73.9
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 2.1e-139 500.0 357 73.4
Cpa.g.sc27.112 Carica papaya HOM05D003219 ORTHO05D005190 3.5e-139 499.2 366 71.9
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 4.6e-139 498.8 356 67.1
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 1.0e-138 497.7 363 73.3
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 1.8e-138 496.9 357 71.1
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 1.8e-138 496.9 357 72.8
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 3.0e-138 496.1 357 70.6
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 3.9e-138 495.7 357 72.5
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 5.1e-138 495.4 357 72.8
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 5.1e-138 495.4 357 72.8
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 8.7e-138 494.6 362 71.8
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 8.7e-138 494.6 361 72.0
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 1.5e-137 493.8 357 72.3
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 1.5e-137 493.8 364 72.3
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 1.5e-137 493.8 358 70.1
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 1.9e-137 493.4 357 72.5
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 2.5e-137 493.0 356 71.1
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 3.3e-137 492.7 356 67.7
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 7.4e-137 491.5 356 72.5
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 9.7e-137 491.1 362 71.0
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 1.6e-136 490.3 357 67.8
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 1.6e-136 490.3 356 73.0
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 1.6e-136 490.3 356 73.0
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 2.2e-136 490.0 361 70.9
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 2.8e-136 489.6 356 72.8
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 8.2e-136 488.0 357 72.8
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 1.4e-135 487.3 357 70.6
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 1.8e-135 486.9 356 68.0
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 1.8e-135 486.9 372 69.4
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 3.1e-135 486.1 356 72.2
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 6.9e-135 485.0 356 70.2
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 1.5e-134 483.8 357 69.2
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 1.5e-134 483.8 357 67.2
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 1.5e-134 483.8 357 67.2
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 2.0e-134 483.4 357 72.5
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 2.0e-134 483.4 357 70.9
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 5.9e-134 481.9 360 67.8
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 7.7e-134 481.5 357 71.1
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 7.7e-134 481.5 357 67.2
GSVIVG01006714001 Vitis vinifera HOM05D003219 ORTHO05D005190 1.0e-133 481.1 312 79.5
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 1.3e-133 480.7 362 70.2
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 1.7e-133 480.3 357 70.9
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 2.2e-133 479.9 369 67.5
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 5.0e-133 478.8 356 71.6
Mapoly0119s0057 Marchantia polymorpha HOM05D003219 ORTHO05D005190 5.0e-133 478.8 362 70.4
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 6.5e-133 478.4 309 79.3
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 1.1e-132 477.6 359 71.3
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 2.5e-132 476.5 372 66.1
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 2.5e-132 476.5 366 67.5
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 2.5e-132 476.5 356 71.6
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 4.2e-132 475.7 356 67.1
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 7.2e-132 474.9 357 70.0
Migut.O00672 Erythranthe guttata HOM05D003219 ORTHO05D005190 7.2e-132 474.9 357 70.0
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 7.2e-132 474.9 357 70.0
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 1.6e-131 473.8 360 70.3
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 1.6e-131 473.8 357 68.1
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 3.6e-131 472.6 364 64.6
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.6e-131 472.6 364 64.8
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 3.6e-131 472.6 360 67.8
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 3.6e-131 472.6 364 70.3
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 4.6e-131 472.2 358 68.2
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 4.6e-131 472.2 364 64.0
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 4.6e-131 472.2 356 71.1
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.9e-131 471.5 364 64.3
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.9e-131 471.5 364 64.3
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.0e-130 471.1 358 67.9
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 1.4e-130 470.7 357 69.2
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 1.8e-130 470.3 360 68.9
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 3.9e-130 469.2 356 65.4
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 5.1e-130 468.8 357 68.1
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 6.7e-130 468.4 357 67.8
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 6.7e-130 468.4 357 67.8
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 6.7e-130 468.4 357 66.9
MBI11_g22684_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 8.8e-130 468.0 359 64.9
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 1.1e-129 467.6 357 67.8
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 1.1e-129 467.6 357 67.8
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 1.7e-128 463.8 357 66.9
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 2.2e-128 463.4 357 66.7
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 1.1e-127 461.1 357 61.9
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 7.7e-126 454.9 355 67.9
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 2.2e-125 453.4 358 67.3
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 5.1e-122 442.2 353 64.3
Zm00001eb110380 Zea mays HOM05D003219 ORTHO05D005190 5.1e-122 442.2 356 60.1
Zm00001eb329230 Zea mays HOM05D003219 ORTHO05D005190 1.3e-120 437.6 356 59.6
Os07g0644300 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 3.7e-120 436.0 356 59.0
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 1.1e-119 434.5 300 74.0
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 1.1e-119 434.5 355 61.1
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 7.7e-118 428.3 357 61.3
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 9.4e-116 421.4 356 61.8
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 1.2e-115 421.0 356 61.2
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 3.6e-115 419.5 358 60.9
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.2e-114 415.6 356 61.0
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 2.0e-113 413.7 301 67.8
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.7e-112 410.6 343 59.2
Actinidia01932 Actinidia chinensis HOM05D003219 ORTHO05D005190 2.2e-112 410.2 358 65.1
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.1e-108 397.9 346 57.5
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 4.7e-107 392.5 353 55.5
Cre12.g513500 Chlamydomonas reinhardtii HOM05D003219 ORTHO05D005190 1.4e-106 391.0 358 59.5
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 1.1e-103 381.3 264 70.8
VMungo0464G0452 Vigna mungo HOM05D003219 ORTHO05D005190 3.0e-98 363.2 357 58.8
Actinidia05585 Actinidia chinensis HOM05D003219 ORTHO05D005190 2.4e-95 353.6 359 59.3
MCO01G142 Micromonas commoda HOM05D003219 ORTHO05D005190 1.3e-85 321.2 311 55.0
FAN21G3557 Fragaria x ananassa HOM05D003219 ORTHO05D005190 7.3e-84 315.5 272 62.1
BcaNung05343 Brassica carinata HOM05D003219 ORTHO05D005190 1.0e-82 311.6 302 51.7
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 1.2e-81 308.1 247 63.6
PRCOL_00006288 Prasinoderma coloniale HOM05D003219 ORTHO05D005190 2.0e-78 297.4 329 45.0
Aqoxy7G03800 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 5.0e-77 292.7 256 59.4
Os06g0235800 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 1.1e-76 291.6 355 43.1
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 2.1e-70 270.8 300 46.7
Haze_26834 Corylus avellana HOM05D003219 ORTHO05D005190 2.5e-68 263.8 320 43.1
RcHm_v2.0_Chr5g0006201 Rosa chinensis HOM05D003219 ORTHO05D005190 5.2e-58 229.6 171 64.3
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 3.4e-57 226.9 262 45.4
Cfa023613 Carpinus fangiana HOM05D003219 ORTHO05D005190 1.9e-55 221.1 327 37.9
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 5.1e-53 213.0 148 71.6
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 4.3e-52 209.9 148 70.9
ATR0753G038 Amborella trichopoda HOM05D003219 ORTHO05D026562 9.3e-39 165.6 147 57.1
arahy.Tifrunner.gnm1.ann1.60DR5P Arachis hypogaea HOM05D002133 ORTHO05D002256 7.4e-28 129.4 281 33.5
Medtr5g027050 Medicago truncatula HOM05D003219 ORTHO05D005190 7.9e-22 109.4 158 41.1
AagrBONN_evm.TU.Sc2ySwM_344.296 Anthoceros agrestis HOM05D003219 ORTHO05D074497 4.3e-20 103.6 72 65.3
Nn4g24836 Nelumbo nucifera HOM05D003219 ORTHO05D005190 2.4e-18 97.8 110 51.8
C05p13930 Brassica napus HOM05D003219 ORTHO05D024530 1.5e-17 95.1 89 56.2
Aqoxy2G01160 Aquilegia oxysepala HOM05D003219 ORTHO05D077943 6.5e-16 89.7 110 46.4
Mapoly0033s0164 Marchantia polymorpha HOM05D003219 ORTHO05D026562 3.0e-13 80.9 81 51.9
Solyc03g150110.1 Solanum lycopersicum HOM05D003219 ORTHO05D390491 3.0e-13 80.9 101 47.5
C04p25950 Brassica napus HOM05D003219 ORTHO05D024530 6.7e-13 79.7 100 47.0
C05p51060 Brassica napus HOM05D003219 ORTHO05D024530 6.7e-13 79.7 100 47.0
BolC4t24214H Brassica oleracea HOM05D003219 ORTHO05D024530 6.7e-13 79.7 100 47.0
Aqoxy7G04116 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.1e-10 70.9 160 34.4
Aqoxy7G01613 Aquilegia oxysepala HOM05D003219 ORTHO05D000067 1.0e-08 65.9 131 36.6
SEGI_20139 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 1.7e-08 65.1 41 80.5
SEGI_08915 Sequoiadendron giganteum HOM05D005231 ORTHO05D000043 1.1e-07 62.4 35 88.6
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.2e-07 60.5 35 88.6
ATR0753G112 Amborella trichopoda HOM05D003219 ORTHO05D026562 9.4e-07 59.3 60 53.3


User provided reference genes

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