Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15929 Sequoiadendron giganteum HOM05D007440 ORTHO05D009418 6.0e-97 357.5 173 100.0
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 1.7e-22 110.2 88 60.2
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 6.3e-22 108.2 67 70.1
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 3.1e-21 105.9 66 72.7
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 7.0e-21 104.8 67 68.7
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 1.6e-20 103.6 66 71.2
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 3.5e-20 102.4 67 68.7
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 4.5e-20 102.1 96 51.0
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 1.0e-19 100.9 66 69.7
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 1.3e-19 100.5 69 63.8
RcHm_v2.0_Chr7g0230881 Rosa chinensis HOM05D007440 ORTHO05D009418 1.3e-19 100.5 68 64.7
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 1.7e-19 100.1 66 66.7
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 2.2e-19 99.8 95 55.8
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 2.2e-19 99.8 66 66.7
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 2.2e-19 99.8 70 64.3
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 2.9e-19 99.4 95 55.8
Mapoly0046s0064 Marchantia polymorpha HOM05D007440 ORTHO05D009418 2.9e-19 99.4 94 50.0
Pp3c9_24070 Physcomitrium patens HOM05D007440 ORTHO05D009418 5.0e-19 98.6 112 46.4
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 5.0e-19 98.6 66 66.7
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 5.0e-19 98.6 66 65.2
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 5.0e-19 98.6 66 65.2
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 6.5e-19 98.2 67 64.2
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 6.5e-19 98.2 66 66.7
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 6.5e-19 98.2 66 63.6
FAN08G1847 Fragaria x ananassa HOM05D007440 ORTHO05D009418 6.5e-19 98.2 66 63.6
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 6.5e-19 98.2 66 63.6
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 6.5e-19 98.2 67 64.2
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 6.5e-19 98.2 66 65.2
Eucgr.H00023 Eucalyptus grandis HOM05D007440 ORTHO05D009418 8.5e-19 97.8 66 65.2
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 8.5e-19 97.8 66 65.2
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 8.5e-19 97.8 66 65.2
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 8.5e-19 97.8 66 68.2
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 8.5e-19 97.8 75 60.0
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 1.1e-18 97.4 67 64.2
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 1.5e-18 97.1 70 62.9
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 1.5e-18 97.1 75 61.3
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 65.2
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 66.7
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 65.2
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 65.2
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 66.7
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 66.7
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 63.6
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 1.5e-18 97.1 66 66.7
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 1.9e-18 96.7 129 41.1
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 2.5e-18 96.3 66 65.2
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 2.5e-18 96.3 81 56.8
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 2.5e-18 96.3 66 63.6
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 3.2e-18 95.9 68 61.8
PGSC0003DMG402002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 3.2e-18 95.9 68 61.8
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 3.2e-18 95.9 66 63.6
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 4.2e-18 95.5 66 63.6
CSS0018984 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 5.5e-18 95.1 66 65.2
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 5.5e-18 95.1 66 65.2
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 7.2e-18 94.7 66 65.2
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 9.4e-18 94.4 68 60.3
CAN.G8.41 Capsicum annuum HOM05D007440 ORTHO05D009418 1.2e-17 94.0 66 63.6
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 1.2e-17 94.0 66 63.6
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 1.2e-17 94.0 63 68.3
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.6e-17 93.6 66 63.6
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 1.6e-17 93.6 66 63.6
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 1.6e-17 93.6 68 61.8
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 1.6e-17 93.6 66 65.2
vmacro11038 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 1.6e-17 93.6 80 57.5
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 2.1e-17 93.2 92 48.9
AagrBONN_evm.TU.Sc2ySwM_362.1381 Anthoceros agrestis HOM05D007440 ORTHO05D009418 2.7e-17 92.8 106 42.5
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 2.7e-17 92.8 66 62.1
Zm00001eb026400 Zea mays HOM05D007440 ORTHO05D009418 2.7e-17 92.8 66 63.6
Nitab4.5_0000219g0060 Nicotiana tabacum HOM05D007440 ORTHO05D009418 3.6e-17 92.4 104 48.1
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 3.6e-17 92.4 66 62.1
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 3.6e-17 92.4 66 62.1
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 4.7e-17 92.0 63 65.1
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 4.7e-17 92.0 66 62.1
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 3.0e-16 89.4 66 59.1
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 4.0e-16 89.0 64 60.9
ECA247G2087 Erigeron canadensis HOM05D007440 ORTHO05D009418 6.8e-16 88.2 63 63.5
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 6.8e-16 88.2 63 63.5
Lsat_1_v5_gn_7_9441 Lactuca sativa HOM05D007440 ORTHO05D009418 6.8e-16 88.2 63 63.5
Glyma.08G367700 Glycine max HOM05D007440 ORTHO05D009418 8.8e-16 87.8 62 64.5
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 5.7e-15 85.1 63 61.9
CBR_g29696 Chara braunii HOM05D007440 ORTHO05D009418 9.8e-15 84.3 72 52.8
Cre10.g451000 Chlamydomonas reinhardtii HOM05D007440 ORTHO05D009418 7.0e-13 78.2 67 50.7
MCO13G519 Micromonas commoda HOM05D007440 ORTHO05D009418 1.0e-11 74.3 74 47.3
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 4.2e-10 68.9 42 69.0
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 9.4e-10 67.8 41 70.7
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 1.6e-09 67.0 47 59.6
PRCOL_00006364 Prasinoderma coloniale HOM05D007440 ORTHO05D009418 1.0e-08 64.3 64 42.2


User provided reference genes

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