Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.5e-83 312.0 153 100.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 4.6e-24 115.2 96 62.5
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 8.6e-23 110.9 115 53.9
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 8.6e-23 110.9 110 54.5
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.1e-22 110.5 110 55.5
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.5e-22 110.2 110 56.4
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.5e-22 110.2 103 53.4
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.2e-21 107.1 95 54.7
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 3.6e-21 105.5 92 59.8
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 4.7e-21 105.1 103 55.3
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 6.2e-21 104.8 92 59.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.1e-21 104.4 111 48.6
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.4e-20 103.6 92 58.7
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 1.4e-20 103.6 110 53.6
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.8e-20 103.2 95 58.9
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.8e-20 103.2 91 59.3
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 3.1e-20 102.4 98 53.1
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 3.1e-20 102.4 92 58.7
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.1e-20 102.4 92 58.7
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 4.0e-20 102.1 110 50.9
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 4.0e-20 102.1 122 52.5
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 5.2e-20 101.7 92 55.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 5.2e-20 101.7 92 55.4
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 5.2e-20 101.7 98 55.1
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 5.2e-20 101.7 92 57.6
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 5.2e-20 101.7 95 58.9
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 6.8e-20 101.3 92 55.4
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 6.8e-20 101.3 111 51.4
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 1.2e-19 100.5 95 55.8
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.5e-19 100.1 110 50.9
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.0e-19 99.8 95 53.7
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.4e-19 99.0 110 52.7
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 4.4e-19 98.6 108 52.8
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 4.4e-19 98.6 92 55.4
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 4.4e-19 98.6 111 53.2
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 5.8e-19 98.2 95 53.7
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 5.8e-19 98.2 112 48.2
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 7.5e-19 97.8 111 51.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 7.5e-19 97.8 110 52.7
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 7.5e-19 97.8 110 52.7
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 9.8e-19 97.4 95 53.7
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 9.8e-19 97.4 104 52.9
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.7e-18 96.7 95 53.7
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.7e-18 96.7 96 53.1
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 1.7e-18 96.7 111 51.4
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.7e-18 96.7 97 53.6
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.2e-18 96.3 116 47.4
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 2.2e-18 96.3 110 49.1
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.9e-18 95.9 123 47.2
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.9e-18 95.9 95 51.6
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 3.7e-18 95.5 95 52.6
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 3.7e-18 95.5 106 52.8
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.7e-18 95.5 110 50.9
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 4.9e-18 95.1 89 58.4
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 4.9e-18 95.1 121 47.1
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 4.9e-18 95.1 106 51.9
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 4.9e-18 95.1 112 49.1
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.4e-18 94.7 105 49.5
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 6.4e-18 94.7 110 46.4
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.4e-18 94.7 110 46.4
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 6.4e-18 94.7 100 54.0
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 6.4e-18 94.7 96 52.1
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 8.3e-18 94.4 111 49.5
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 8.3e-18 94.4 105 50.5
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.3e-18 94.4 105 49.5
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 8.3e-18 94.4 104 51.9
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.4e-17 93.6 112 49.1
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.9e-17 93.2 112 48.2
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-17 93.2 105 49.5
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 2.4e-17 92.8 96 54.2
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.4e-17 92.8 95 50.5
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.4e-17 92.8 103 48.5
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 3.2e-17 92.4 111 47.7
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 3.2e-17 92.4 122 45.9
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 3.2e-17 92.4 105 49.5
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 3.2e-17 92.4 96 51.0
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 5.4e-17 91.7 96 56.2
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 5.4e-17 91.7 96 54.2
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.4e-17 91.7 105 51.4
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 5.4e-17 91.7 111 47.7
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 7.1e-17 91.3 96 53.1
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 7.1e-17 91.3 96 52.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 7.1e-17 91.3 111 45.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 9.2e-17 90.9 95 50.5
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 9.2e-17 90.9 111 45.9
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 1.2e-16 90.5 96 51.0
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 1.6e-16 90.1 87 55.2
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 1.6e-16 90.1 111 47.7
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-16 90.1 111 45.9
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.6e-16 90.1 104 51.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.6e-16 90.1 114 48.2
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.6e-16 90.1 96 53.1
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.1e-16 89.7 110 44.5
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.7e-16 89.4 103 46.6
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 2.7e-16 89.4 105 48.6
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.7e-16 89.4 105 48.6
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.7e-16 89.4 111 46.8
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.7e-16 89.4 95 50.5
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 3.5e-16 89.0 91 52.7
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 3.5e-16 89.0 112 45.5
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 3.5e-16 89.0 122 43.4
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 4.6e-16 88.6 95 51.6
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 4.6e-16 88.6 90 53.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 6.0e-16 88.2 121 43.8
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 6.0e-16 88.2 92 52.2
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 6.0e-16 88.2 107 47.7
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.0e-15 87.4 121 43.8
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.0e-15 87.4 122 43.4
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.0e-15 87.4 104 51.0
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.0e-15 87.4 106 50.0
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.0e-15 87.4 108 46.3
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.3e-15 87.0 116 46.6
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.3e-15 87.0 104 50.0
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 3.0e-15 85.9 107 48.6
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 3.0e-15 85.9 104 50.0
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 3.0e-15 85.9 112 48.2
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 3.9e-15 85.5 105 48.6
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.9e-15 85.5 96 50.0
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 5.1e-15 85.1 96 50.0
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 5.1e-15 85.1 103 48.5
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 8.6e-15 84.3 105 47.6
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 8.6e-15 84.3 101 48.5
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 8.6e-15 84.3 101 46.5
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 1.5e-14 83.6 96 53.1
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.5e-14 83.6 111 42.3
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.9e-14 83.2 96 49.0
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 1.9e-14 83.2 106 44.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 2.5e-14 82.8 121 43.8
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.3e-14 82.0 95 45.3
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 5.6e-14 81.6 96 46.9
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 7.3e-14 81.3 95 47.4
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.1e-13 79.7 105 44.8
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.8e-13 79.3 92 47.8
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 3.6e-13 79.0 127 39.4
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 4.7e-13 78.6 91 44.0
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 4.7e-13 78.6 99 46.5
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 6.2e-13 78.2 92 46.7
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 4.0e-12 75.5 76 51.3
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 8.9e-12 74.3 83 49.4
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 3.4e-11 72.4 100 42.0
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 4.9e-10 68.6 113 35.4
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 8.4e-10 67.8 110 40.0
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 8.4e-10 67.8 96 41.7
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 1.9e-09 66.6 64 53.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 1.2e-08 63.9 109 39.4
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 3.5e-08 62.4 75 46.7
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.5e-06 56.2 52 51.9


User provided reference genes

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