Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 8.0e-157 557.0 271 100.0
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 9.0e-116 420.6 253 76.3
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.6e-115 419.1 253 77.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 8.4e-114 414.1 253 74.3
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 7.1e-113 411.0 251 74.9
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.7e-109 398.7 251 72.5
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 8.2e-109 397.5 253 71.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 9.0e-108 394.0 251 72.1
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.0e-107 392.9 253 72.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 5.8e-107 391.3 253 71.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.3e-106 390.2 253 69.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.3e-106 390.2 253 71.5
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 6.5e-106 387.9 253 71.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 8.4e-106 387.5 251 72.1
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.9e-105 386.3 253 69.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 9.3e-105 384.0 253 71.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.2e-104 383.6 253 69.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.7e-104 382.5 253 71.1
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 3.5e-104 382.1 253 68.4
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 7.9e-104 380.9 251 68.5
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.0e-103 380.6 253 66.4
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.0e-103 380.6 253 70.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.0e-103 380.6 254 70.1
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.8e-103 379.8 252 69.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.3e-103 379.4 253 66.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 6.7e-103 377.9 253 67.6
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.5e-102 376.7 263 65.4
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.5e-102 376.7 251 68.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-102 376.7 253 66.8
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-102 376.7 253 66.8
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 4.3e-102 375.2 252 68.3
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.4e-102 374.4 253 67.6
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 7.4e-102 374.4 251 67.3
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-101 372.5 251 69.3
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-101 372.5 251 69.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.8e-101 372.5 253 68.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.7e-101 372.1 253 66.4
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.8e-101 371.7 253 67.2
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 4.8e-101 371.7 253 66.8
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-100 370.5 253 67.2
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.1e-100 370.5 251 67.3
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.1e-100 370.5 253 66.4
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.4e-100 370.2 253 66.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.4e-100 370.2 251 68.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.4e-100 370.2 251 67.3
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-100 370.2 254 65.4
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.4e-100 370.2 253 65.6
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.4e-100 370.2 252 67.9
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.4e-100 369.4 253 67.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.4e-100 369.4 251 67.7
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.1e-100 369.0 251 66.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 4.1e-100 368.6 253 66.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.3e-100 368.2 253 66.8
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 5.3e-100 368.2 253 67.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 5.3e-100 368.2 253 69.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 5.3e-100 368.2 253 66.0
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 5.3e-100 368.2 257 65.8
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.3e-100 368.2 251 68.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 9.0e-100 367.5 253 66.4
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 9.0e-100 367.5 253 66.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 9.0e-100 367.5 252 66.7
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.5e-99 366.7 251 68.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.5e-99 366.7 253 66.8
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 2.6e-99 365.9 253 66.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.6e-99 365.9 253 65.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.6e-99 365.9 252 66.7
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.4e-99 365.5 253 64.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 7.6e-99 364.4 253 65.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 7.6e-99 364.4 253 66.0
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.3e-98 363.6 253 63.2
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.7e-98 363.2 253 66.0
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.2e-98 362.8 253 65.6
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.9e-98 362.5 253 65.6
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.8e-98 362.1 253 64.8
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.8e-98 362.1 251 67.7
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 5.0e-98 361.7 253 66.4
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 6.5e-98 361.3 253 65.6
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 6.5e-98 361.3 253 65.6
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 6.5e-98 361.3 251 64.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 8.5e-98 360.9 251 65.3
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-97 359.8 253 64.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.9e-97 359.8 253 64.8
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.9e-97 359.8 253 64.4
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.5e-97 359.4 253 64.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 9.3e-97 357.5 253 64.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 9.3e-97 357.5 253 63.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.2e-96 357.1 251 66.5
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-96 357.1 257 65.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-96 357.1 257 64.6
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.6e-96 356.7 256 67.2
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.6e-96 356.7 251 65.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.1e-96 356.3 251 66.5
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.1e-96 356.3 253 63.6
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.7e-96 355.9 253 63.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.7e-96 355.9 253 64.0
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.6e-96 355.5 253 62.8
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 7.9e-96 354.4 257 65.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-95 353.2 253 65.2
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.0e-95 352.4 253 62.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 3.9e-95 352.1 277 60.3
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 6.7e-95 351.3 257 63.0
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 6.7e-95 351.3 257 63.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.9e-94 349.7 253 61.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 4.3e-94 348.6 251 65.3
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 9.7e-94 347.4 253 65.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-93 347.1 269 60.6
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.3e-93 347.1 253 63.6
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 2.8e-93 345.9 251 63.7
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.4e-92 342.8 254 61.8
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-92 342.4 267 60.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.1e-92 342.4 254 63.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.3e-92 341.7 270 60.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.7e-88 328.6 256 63.3
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.0e-87 327.4 210 70.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.7e-86 321.6 266 58.3
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.4e-84 316.2 273 57.9
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.1e-84 315.5 253 56.9
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 5.3e-76 288.5 310 49.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.2e-73 279.3 170 75.3
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.6e-72 276.9 253 52.2
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.4e-62 242.3 177 61.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.7e-53 212.6 250 46.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.3e-53 211.8 134 69.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.3e-50 203.4 337 34.7
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 4.3e-49 199.1 282 42.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 8.9e-47 191.4 178 52.2
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.0e-43 178.7 189 50.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 5.2e-39 165.6 275 36.4
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.1e-35 153.7 127 57.5
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.7e-35 153.3 278 36.0
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.3e-31 140.2 107 65.4
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 6.4e-29 132.1 213 39.0
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 8.3e-29 131.7 85 64.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.5e-27 126.3 255 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.3e-25 119.8 118 51.7
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.8e-22 109.0 275 28.4
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 8.4e-21 105.1 284 26.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.0e-15 86.3 186 34.9
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-10 69.3 194 29.9
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-08 63.9 65 49.2
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.4e-07 60.5 29 86.2


User provided reference genes

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