Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.7e-211 737.6 382 100.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 3.9e-125 452.2 371 63.6
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 2.0e-124 449.9 368 65.5
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 2.2e-123 446.4 373 63.5
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 3.7e-123 445.7 373 63.8
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 3.7e-123 445.7 371 62.3
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 8.2e-123 444.5 369 62.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 3.4e-121 439.1 371 61.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 1.7e-120 436.8 367 61.0
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 3.8e-120 435.6 372 60.5
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 8.5e-120 434.5 375 61.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 3.2e-119 432.6 371 59.0
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.2e-119 432.2 367 60.2
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 7.2e-119 431.4 369 59.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 1.2e-118 430.6 368 60.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 1.6e-118 430.3 368 60.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.7e-118 428.7 367 59.7
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 4.7e-118 428.7 375 60.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 1.0e-117 427.6 358 61.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 1.4e-117 427.2 358 61.5
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 1.4e-117 427.2 371 58.8
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.8e-117 426.8 372 59.4
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 2.3e-117 426.4 373 60.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 2.3e-117 426.4 369 61.0
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 2.3e-117 426.4 367 59.4
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 3.0e-117 426.0 362 61.6
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 5.1e-117 425.2 371 59.8
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.7e-117 424.9 371 59.6
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 1.5e-116 423.7 371 58.5
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 2.6e-116 422.9 365 61.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.3e-116 422.5 371 59.8
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 4.4e-116 422.2 367 58.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.4e-116 422.2 367 58.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 5.7e-116 421.8 371 59.6
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 5.7e-116 421.8 371 59.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.4e-116 421.4 371 59.3
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 9.7e-116 421.0 371 58.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.3e-115 418.3 357 60.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 8.2e-115 417.9 371 58.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 1.1e-114 417.5 371 57.7
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.4e-114 417.2 369 59.9
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-114 417.2 371 58.0
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 4.1e-114 415.6 373 59.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 5.3e-114 415.2 365 59.5
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 7.0e-114 414.8 365 58.9
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 7.0e-114 414.8 371 57.7
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 2.6e-113 412.9 364 58.5
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 3.5e-113 412.5 368 58.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 1.7e-112 410.2 365 58.6
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 1.7e-112 410.2 371 58.2
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 2.9e-112 409.5 366 57.9
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 6.5e-112 408.3 368 58.2
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 1.5e-111 407.1 364 57.7
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 2.5e-111 406.4 359 61.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.2e-111 406.0 225 95.1
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 7.2e-111 404.8 364 57.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 9.4e-111 404.4 364 57.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 1.2e-110 404.1 356 58.7
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 1.2e-110 404.1 356 59.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 1.2e-110 404.1 364 56.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.6e-110 403.7 361 58.2
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 1.6e-110 403.7 356 58.7
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 2.1e-110 403.3 364 58.2
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 3.6e-110 402.5 369 56.4
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 3.6e-110 402.5 369 58.0
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 6.1e-110 401.7 362 57.5
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 6.1e-110 401.7 356 58.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 6.1e-110 401.7 365 58.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 6.1e-110 401.7 365 57.5
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 6.1e-110 401.7 371 57.7
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 6.1e-110 401.7 358 59.5
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 1.0e-109 401.0 356 58.1
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.0e-109 401.0 212 99.1
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 1.4e-109 400.6 365 58.1
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 1.4e-109 400.6 369 58.0
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 2.3e-109 399.8 365 58.1
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 3.9e-109 399.1 365 57.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 3.9e-109 399.1 353 58.1
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 2.0e-108 396.7 357 58.5
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 9.7e-108 394.4 365 57.5
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 9.7e-108 394.4 369 57.2
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 1.3e-107 394.0 354 58.5
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.2e-107 393.3 369 56.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 2.8e-107 392.9 351 61.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 6.3e-107 391.7 361 57.3
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.1e-106 391.0 361 57.3
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 7.7e-105 384.8 352 57.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.0e-104 384.4 370 54.9
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 1.7e-104 383.6 359 58.5
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 5.0e-104 382.1 355 57.5
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 4.2e-103 379.0 353 56.7
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 9.4e-103 377.9 367 55.0
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 2.1e-102 376.7 366 56.3
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.4e-101 374.0 366 56.6
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 8.3e-99 364.8 339 57.5
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 1.6e-97 360.5 372 53.0
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 3.5e-97 359.4 361 54.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 6.1e-94 348.6 348 55.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 2.3e-93 346.7 375 52.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 8.8e-93 344.7 544 40.4
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 1.1e-90 337.8 373 53.9
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.7e-89 333.2 292 59.2
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 1.1e-87 327.8 327 56.0
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 2.8e-86 323.2 362 50.0
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 1.6e-81 307.4 276 59.4
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 2.9e-80 303.1 274 59.1
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 2.9e-80 303.1 344 52.3
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 1.5e-79 300.8 262 59.9
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 4.9e-75 285.8 268 54.9
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 3.5e-73 279.6 340 47.4
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.7e-57 226.9 159 67.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.8e-57 225.3 162 66.0
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.6e-54 216.5 231 53.2
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 8.1e-54 215.3 210 58.1
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 6.8e-53 212.2 230 52.2
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 3.8e-51 206.5 213 55.4
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.1e-48 196.1 192 54.2
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-44 184.1 194 54.6
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 7.9e-33 145.6 187 48.7
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 4.8e-30 136.3 108 59.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.6e-28 130.6 92 64.1
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.7e-27 127.9 118 54.2
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 7.1e-26 122.5 98 57.1
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.6e-22 111.3 148 48.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.4e-21 107.5 91 56.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.6e-17 93.2 80 60.0
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.0e-16 92.0 98 56.1
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.3e-11 75.1 82 52.4
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.3e-08 64.3 46 58.7
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.0e-08 63.9 70 42.9
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.0e-07 61.2 54 55.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-06 58.5 54 53.7


User provided reference genes

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