Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15822 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 2.5e-78 295.4 155 100.0
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 7.1e-25 117.9 113 53.1
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 1.5e-22 110.2 106 50.0
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 4.3e-22 108.6 105 48.6
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 1.6e-21 106.7 98 55.1
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 8.2e-21 104.4 101 53.5
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 1.1e-20 104.0 102 50.0
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 1.4e-20 103.6 101 48.5
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.8e-20 103.2 106 48.1
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 2.4e-20 102.8 101 50.5
Oeu004354.1 Olea europaea HOM05D003637 ORTHO05D004175 3.1e-20 102.4 100 51.0
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 3.1e-20 102.4 99 53.5
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 4.0e-20 102.1 103 49.5
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 5.3e-20 101.7 102 48.0
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 5.3e-20 101.7 101 48.5
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 5.3e-20 101.7 98 52.0
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 6.9e-20 101.3 98 50.0
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.6e-19 99.4 99 52.5
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 3.4e-19 99.0 98 49.0
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 3.4e-19 99.0 98 50.0
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 3.4e-19 99.0 98 50.0
vmacro18731 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 3.4e-19 99.0 102 46.1
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 7.6e-19 97.8 101 46.5
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 1.7e-18 96.7 101 47.5
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.7e-18 96.7 100 45.0
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.9e-18 95.9 97 46.4
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 2.9e-18 95.9 101 46.5
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 3.8e-18 95.5 98 48.0
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 3.8e-18 95.5 102 47.1
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 5.0e-18 95.1 101 47.5
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 5.0e-18 95.1 101 47.5
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 5.0e-18 95.1 99 49.5
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 6.5e-18 94.7 100 46.0
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 6.5e-18 94.7 99 47.5
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 8.4e-18 94.4 100 45.0
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 8.4e-18 94.4 100 45.0
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 8.4e-18 94.4 98 50.0
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 1.1e-17 94.0 100 46.0
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 1.9e-17 93.2 100 44.0
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 1.9e-17 93.2 101 42.6
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 2.5e-17 92.8 101 46.5
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 2.5e-17 92.8 100 45.0
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 2.5e-17 92.8 100 45.0
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 3.2e-17 92.4 104 40.4
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 3.2e-17 92.4 98 48.0
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 3.2e-17 92.4 98 48.0
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.2e-17 92.4 103 49.5
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 4.2e-17 92.0 99 47.5
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 5.5e-17 91.7 99 48.5
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 5.5e-17 91.7 99 48.5
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 5.5e-17 91.7 99 48.5
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 5.5e-17 91.7 99 48.5
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 7.1e-17 91.3 98 46.9
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 7.1e-17 91.3 101 44.6
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 7.1e-17 91.3 100 44.0
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.2e-16 90.5 99 47.5
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.2e-16 90.5 99 47.5
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.2e-16 90.5 98 48.0
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.2e-16 90.5 99 47.5
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 2.1e-16 89.7 106 44.3
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 2.7e-16 89.4 98 45.9
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 2.7e-16 89.4 98 45.9
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 7.9e-16 87.8 100 43.0
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 7.9e-16 87.8 99 43.4
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 1.0e-15 87.4 99 42.4
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.0e-15 87.4 103 46.6
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.3e-15 87.0 100 42.0
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 1.3e-15 87.0 100 46.0
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 1.8e-15 86.7 104 38.5
GSVIVG01036287001 Vitis vinifera HOM05D003637 ORTHO05D004175 1.8e-15 86.7 104 44.2
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 2.3e-15 86.3 111 39.6
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 2.3e-15 86.3 100 41.0
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 3.0e-15 85.9 100 43.0
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 3.9e-15 85.5 101 43.6
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 3.9e-15 85.5 101 43.6
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 3.9e-15 85.5 102 42.2
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 5.1e-15 85.1 103 44.7
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 1.5e-14 83.6 97 42.3
TPR.G29191 Trifolium pratense HOM05D003637 ORTHO05D004175 1.5e-14 83.6 100 46.0
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.5e-14 83.6 103 43.7
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 1.9e-14 83.2 106 47.2
HanXRQChr01g0009571 Helianthus annuus HOM05D003637 ORTHO05D004175 1.9e-14 83.2 111 40.5
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 1.9e-14 83.2 103 44.7
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 2.5e-14 82.8 102 43.1
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 3.3e-14 82.4 101 41.6
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 3.3e-14 82.4 102 42.2
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 4.3e-14 82.0 102 43.1
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 4.3e-14 82.0 103 44.7
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 4.3e-14 82.0 108 40.7
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 5.7e-14 81.6 98 41.8
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 9.7e-14 80.9 107 42.1
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 9.7e-14 80.9 107 42.1
Nitab4.5_0002446g0120 Nicotiana tabacum HOM05D003637 ORTHO05D004175 9.7e-14 80.9 95 45.3
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 1.6e-13 80.1 110 39.1
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 1.6e-13 80.1 100 41.0
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 2.8e-13 79.3 101 44.6
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 4.8e-13 78.6 101 39.6
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 8.2e-13 77.8 99 39.4
PSO210G6366 Papaver somniferum HOM05D003637 ORTHO05D004175 1.1e-12 77.4 79 44.3
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.1e-12 77.4 101 43.6
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 1.5e-11 73.6 124 35.5
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 2.0e-11 73.2 104 40.4
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 2.0e-11 73.2 101 39.6
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 2.0e-11 73.2 104 39.4
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 2.6e-11 72.8 104 41.3
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 2.6e-11 72.8 104 41.3
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 2.6e-11 72.8 104 41.3
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 3.4e-11 72.4 104 41.3
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 5.9e-11 71.6 108 38.0
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 7.7e-11 71.2 104 37.5
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 7.7e-11 71.2 102 43.1
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.7e-10 70.1 104 40.4
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 3.8e-10 68.9 105 40.0
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 3.8e-10 68.9 106 38.7
CDE10G0063 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 3.8e-10 68.9 72 48.6
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 6.5e-10 68.2 106 38.7
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 6.5e-10 68.2 106 38.7
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 8.5e-10 67.8 106 38.7
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 1.4e-09 67.0 100 35.0
Haze_10274 Corylus avellana HOM05D000058 ORTHO05D004175 2.5e-09 66.2 70 47.1
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 2.5e-09 66.2 94 38.3
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 9.4e-09 64.3 105 38.1
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 1.6e-08 63.5 106 38.7
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 6.1e-08 61.6 103 37.9
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 2.0e-06 56.6 46 54.3


User provided reference genes

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