Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 9.3e-49 198.0 267 100.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 7.7e-27 125.2 194 62.4
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.2e-24 117.9 277 65.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 8.8e-23 111.7 194 71.6
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.5e-22 110.9 194 67.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 4.1e-20 102.8 277 63.2
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.1e-20 101.7 275 60.0
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.7e-19 100.1 277 50.5
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.9e-19 99.0 274 56.2
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.5e-17 94.4 194 61.9
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.5e-17 92.4 194 67.0
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.2e-16 91.3 195 69.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.2e-16 91.3 195 69.7
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.7e-16 90.1 278 54.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.6e-16 89.7 274 62.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 8.0e-16 88.6 194 69.1
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 8.0e-16 88.6 173 55.5
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-15 87.8 278 60.4
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.4e-15 87.8 263 65.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.0e-15 86.7 193 63.2
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 6.8e-15 85.5 194 64.9
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.2e-14 84.7 160 63.8
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.5e-14 84.3 278 56.1
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.0e-14 84.0 195 61.5
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.0e-14 84.0 280 53.2
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.0e-14 84.0 187 62.0
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.6e-14 83.6 194 56.2
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.6e-14 83.6 194 60.3
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.4e-14 82.8 278 56.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 4.4e-14 82.8 278 57.9
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 7.5e-14 82.0 278 61.5
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 7.5e-14 82.0 278 62.9
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-13 80.9 278 59.7
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.2e-13 80.5 278 58.3
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-13 80.5 194 60.3
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.7e-13 79.7 196 51.0
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 8.3e-13 78.6 194 44.3
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.1e-12 78.2 194 54.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.1e-12 78.2 160 68.1
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.1e-12 78.2 194 62.4
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.1e-12 78.2 195 60.5
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.4e-12 77.8 182 39.6
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.8e-12 77.4 194 65.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.8e-12 77.4 276 60.1
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.8e-12 77.4 172 49.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.4e-12 77.0 194 67.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 3.1e-12 76.6 194 62.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.1e-12 76.6 90 50.0
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.1e-12 76.3 178 53.4
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.4e-12 75.9 94 59.6
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.4e-12 75.9 190 58.9
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 5.4e-12 75.9 160 61.9
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.2e-11 74.7 194 67.5
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.2e-11 74.7 174 58.6
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-11 74.3 299 54.2
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 2.0e-11 73.9 159 62.9
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 2.0e-11 73.9 181 66.9
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.7e-11 73.6 278 64.4
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.7e-11 73.6 194 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2461 Anthoceros agrestis HOM05D003347 ORTHO05D003821 3.5e-11 73.2 160 79.4
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 4.5e-11 72.8 278 59.7
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 5.9e-11 72.4 177 65.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.9e-11 72.4 184 58.2
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 7.7e-11 72.0 90 54.4
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 1.0e-10 71.6 194 68.6
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 1.7e-10 70.9 160 57.5
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.7e-10 70.9 160 57.5
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.7e-10 70.9 174 55.2
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 2.9e-10 70.1 197 56.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.9e-10 70.1 177 54.2
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 2.9e-10 70.1 159 73.0
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.8e-10 69.7 194 65.5
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.8e-10 69.7 276 65.2
SEGI_27842 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 5.0e-10 69.3 165 80.6
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 6.5e-10 68.9 168 61.3
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 6.5e-10 68.9 189 59.3
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 8.5e-10 68.6 153 52.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.1e-09 68.2 194 50.5
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.5e-09 67.8 59 62.7
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.5e-09 67.0 173 50.9
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.5e-09 67.0 195 56.4
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.5e-09 67.0 94 53.2
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.2e-09 66.6 194 51.0
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 3.2e-09 66.6 278 65.8
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 7.2e-09 65.5 187 54.5
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 7.2e-09 65.5 275 54.2
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 9.4e-09 65.1 203 50.2
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 9.4e-09 65.1 278 64.4
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.2e-08 64.7 160 62.5
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.2e-08 64.7 77 49.4
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.2e-08 64.7 186 59.1
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.2e-08 64.7 85 49.4
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.1e-08 63.9 94 43.6
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 2.7e-08 63.5 189 51.9
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.7e-08 63.5 59 57.6
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.7e-08 63.5 156 59.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 6.1e-08 62.4 174 56.9
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 8.0e-08 62.0 59 59.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.0e-07 61.6 159 70.4
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.0e-07 61.6 150 56.0
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.8e-07 60.8 94 50.0
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 1.8e-07 60.8 196 53.1
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.8e-07 60.8 276 52.9
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.8e-07 60.8 181 62.4
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 2.3e-07 60.5 60 58.3
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.0e-07 60.1 173 56.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.0e-07 60.1 157 58.0
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.0e-07 59.7 72 50.0
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 4.0e-07 59.7 58 56.9
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.0e-07 59.7 268 43.3
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 5.2e-07 59.3 160 76.9
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 5.2e-07 59.3 94 42.6
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.8e-07 58.9 157 56.1
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 6.8e-07 58.9 159 67.9
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 6.8e-07 58.9 60 50.0
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 8.8e-07 58.5 194 54.6
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.2e-06 58.2 79 62.0
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.2e-06 58.2 59 55.9
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.2e-06 58.2 57 57.9
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.2e-06 58.2 59 67.8
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.5e-06 57.8 194 58.2
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.5e-06 57.8 157 53.5
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.5e-06 57.8 159 45.9
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.5e-06 57.8 194 55.2
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.0e-06 57.4 269 51.3
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 2.0e-06 57.4 81 59.3
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.0e-06 57.4 150 66.7
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 2.6e-06 57.0 59 52.5
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 2.6e-06 57.0 94 55.3
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 2.6e-06 57.0 207 55.1
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 2.6e-06 57.0 195 61.5
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.6e-06 57.0 133 69.9
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 4.4e-06 56.2 59 52.5
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.7e-06 55.8 196 59.2
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.5e-06 55.5 59 69.5
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 7.5e-06 55.5 91 63.7
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 7.5e-06 55.5 60 68.3
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 9.8e-06 55.1 194 57.7
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 9.8e-06 55.1 196 63.3
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 9.8e-06 55.1 191 45.5
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 9.8e-06 55.1 57 70.2


User provided reference genes

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