Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 1.0e-32 142.9 76 100.0
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.6e-14 81.3 68 63.2
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.6e-14 81.3 58 67.2
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.7e-14 80.9 60 68.3
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 8.1e-14 80.1 63 66.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.4e-13 79.3 60 66.7
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 6.8e-13 77.0 58 67.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 6.8e-13 77.0 52 75.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 8.9e-13 76.6 59 67.8
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-12 76.3 58 67.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.2e-12 76.3 60 63.3
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.2e-12 76.3 56 71.4
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.2e-12 76.3 63 55.6
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-12 75.9 64 67.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.0e-12 75.5 63 63.5
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.0e-12 75.5 64 62.5
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.0e-12 75.5 59 62.7
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.4e-12 74.7 59 64.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.4e-12 74.3 59 64.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.4e-12 74.3 59 64.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 4.4e-12 74.3 63 60.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 4.4e-12 74.3 59 66.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.8e-12 73.9 63 61.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.8e-12 73.9 57 66.7
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.6e-12 73.6 52 69.2
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 9.9e-12 73.2 56 62.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.2e-11 72.0 56 64.3
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.9e-11 70.9 66 54.5
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.4e-11 70.5 59 62.7
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 8.4e-11 70.1 58 60.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.1e-10 69.7 50 70.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-10 69.3 52 63.5
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.4e-10 69.3 62 56.5
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.9e-10 68.9 51 62.7
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.4e-10 68.6 63 55.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.4e-10 68.6 52 63.5
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.2e-10 68.2 61 55.7
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.2e-10 68.2 58 58.6
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.1e-10 67.8 52 65.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.1e-10 67.8 63 52.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.1e-10 67.8 60 60.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.1e-10 67.8 61 55.7
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 4.1e-10 67.8 60 60.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.1e-10 67.8 60 60.0
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.1e-10 67.8 58 58.6
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 4.1e-10 67.8 63 55.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.4e-10 67.4 61 55.7
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 7.1e-10 67.0 53 64.2
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 9.2e-10 66.6 52 67.3
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.2e-09 66.2 57 59.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.6e-09 65.9 66 50.0
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.1e-09 65.5 57 57.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 4.6e-09 64.3 58 53.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 6.0e-09 63.9 58 55.2
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.0e-09 63.9 57 54.4
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 6.0e-09 63.9 57 54.4
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 6.0e-09 63.9 57 54.4
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 6.0e-09 63.9 57 54.4
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 7.8e-09 63.5 59 62.7
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 7.8e-09 63.5 56 57.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 7.8e-09 63.5 53 60.4
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.0e-08 63.2 53 52.8
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.0e-08 63.2 53 52.8
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.0e-08 63.2 53 52.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.0e-08 63.2 53 50.9
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 1.0e-08 63.2 53 62.3
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-08 62.4 49 69.4
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.7e-08 62.4 53 50.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.3e-08 62.0 56 58.9
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 2.3e-08 62.0 62 62.9
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.0e-08 61.6 53 58.5
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 3.0e-08 61.6 35 77.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.9e-08 61.2 53 52.8
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.9e-08 61.2 53 69.8
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.1e-08 60.8 57 50.9
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 5.1e-08 60.8 52 71.2
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 5.1e-08 60.8 40 72.5
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.6e-08 60.5 56 66.1
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 6.6e-08 60.5 49 69.4
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.6e-08 60.5 64 53.1
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.6e-08 60.5 49 65.3
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 6.6e-08 60.5 60 60.0
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 8.7e-08 60.1 51 58.8
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 8.7e-08 60.1 55 65.5
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 8.7e-08 60.1 55 65.5
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.7e-08 60.1 60 50.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 8.7e-08 60.1 60 51.7
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 8.7e-08 60.1 55 63.6
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 8.7e-08 60.1 55 63.6
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-07 59.7 53 67.9
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-07 59.7 53 67.9
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.1e-07 59.7 53 56.6
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.5e-07 59.3 48 62.5
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 49 53.1
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 1.5e-07 59.3 48 62.5
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.9e-07 58.9 49 61.2
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.9e-07 58.9 53 52.8
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.3e-07 58.2 50 60.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.3e-07 58.2 54 59.3
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.3e-07 58.2 49 59.2
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.3e-07 57.8 48 62.5
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.3e-07 57.8 48 62.5
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.3e-07 57.8 48 62.5
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 4.3e-07 57.8 49 57.1
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 5.6e-07 57.4 55 58.2
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.6e-07 57.4 48 60.4
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 5.6e-07 57.4 48 58.3
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.6e-07 56.6 48 58.3
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 9.6e-07 56.6 37 70.3
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 9.6e-07 56.6 35 68.6
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 1.2e-06 56.2 55 45.5
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.6e-06 55.8 62 48.4
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 1.6e-06 55.8 49 57.1
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 2.1e-06 55.5 50 66.0
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 2.1e-06 55.5 53 54.7
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 2.8e-06 55.1 60 48.3
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.8e-06 55.1 54 46.3
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.8e-06 55.1 57 49.1
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 45.5
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 45.5
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 45.5
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 45.5
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 45.5
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 3.6e-06 54.7 50 56.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 47.3
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.6e-06 54.7 53 52.8
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 3.6e-06 54.7 55 63.6
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 4.7e-06 54.3 50 64.0
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 4.7e-06 54.3 50 64.0
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 4.7e-06 54.3 61 45.9
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 8.1e-06 53.5 65 46.2
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 8.1e-06 53.5 54 61.1
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 8.1e-06 53.5 49 67.3
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 8.1e-06 53.5 54 59.3


User provided reference genes

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