Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 4.4e-118 427.9 211 100.0
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 1.1e-28 131.0 73 86.3
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.6e-17 93.2 81 59.3
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 3.7e-16 89.4 70 61.4
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 8.2e-16 88.2 81 55.6
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.8e-15 87.0 81 53.1
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.1e-15 85.9 70 58.6
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 1.2e-14 84.3 72 54.2
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.6e-14 84.0 71 56.3
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 2.0e-14 83.6 70 57.1
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.0e-14 83.6 70 58.6
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 3.5e-14 82.8 70 54.3
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 4.5e-14 82.4 69 60.9
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 5.9e-14 82.0 70 52.9
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 1.3e-13 80.9 70 55.7
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.3e-13 80.9 77 48.1
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.7e-13 80.5 70 54.3
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 2.9e-13 79.7 70 52.9
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 3.8e-13 79.3 69 56.5
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 3.8e-13 79.3 71 54.9
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 3.8e-13 79.3 69 56.5
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 5.0e-13 79.0 80 51.2
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 5.0e-13 79.0 80 51.2
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 5.0e-13 79.0 102 45.1
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 6.5e-13 78.6 70 55.7
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 6.5e-13 78.6 70 55.7
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 6.5e-13 78.6 70 52.9
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 8.5e-13 78.2 69 55.1
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 8.5e-13 78.2 71 53.5
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 8.5e-13 78.2 79 51.9
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 8.5e-13 78.2 71 53.5
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 8.5e-13 78.2 70 52.9
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 8.5e-13 78.2 70 52.9
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 8.5e-13 78.2 72 52.8
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 8.5e-13 78.2 79 50.6
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.1e-12 77.8 79 50.6
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 1.1e-12 77.8 81 49.4
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.1e-12 77.8 68 54.4
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 1.1e-12 77.8 70 54.3
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 1.1e-12 77.8 70 52.9
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.1e-12 77.8 69 55.1
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.1e-12 77.8 65 58.5
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 1.5e-12 77.4 69 55.1
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.5e-12 77.4 73 50.7
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.9e-12 77.0 71 52.1
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 1.9e-12 77.0 71 52.1
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 1.9e-12 77.0 69 56.5
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.9e-12 77.0 69 55.1
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 2.5e-12 76.6 71 52.1
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 2.5e-12 76.6 69 55.1
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.5e-12 76.6 66 56.1
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 2.5e-12 76.6 70 52.9
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 2.5e-12 76.6 70 52.9
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.5e-12 76.6 70 51.4
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 3.2e-12 76.3 70 52.9
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 3.2e-12 76.3 67 56.7
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 4.2e-12 75.9 68 52.9
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 4.2e-12 75.9 69 55.1
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 4.2e-12 75.9 70 52.9
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 5.5e-12 75.5 81 48.1
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 5.5e-12 75.5 69 53.6
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 5.5e-12 75.5 69 55.1
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 5.5e-12 75.5 80 50.0
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 5.5e-12 75.5 72 50.0
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 7.2e-12 75.1 63 58.7
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 7.2e-12 75.1 69 53.6
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 7.2e-12 75.1 74 51.4
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 7.2e-12 75.1 75 52.0
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 7.2e-12 75.1 70 52.9
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 9.4e-12 74.7 69 53.6
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.2e-11 74.3 80 50.0
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 1.2e-11 74.3 70 50.0
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.6e-11 73.9 69 53.6
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 1.6e-11 73.9 111 38.7
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.1e-11 73.6 69 52.2
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 2.1e-11 73.6 74 50.0
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 2.7e-11 73.2 70 51.4
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 2.7e-11 73.2 71 49.3
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 2.7e-11 73.2 68 51.5
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.6e-11 72.8 70 51.4
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 3.6e-11 72.8 63 57.1
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 3.6e-11 72.8 75 50.7
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.6e-11 72.8 75 52.0
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.6e-11 72.8 69 53.6
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.6e-11 72.8 69 52.2
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 3.6e-11 72.8 69 53.6
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.6e-11 72.8 70 50.0
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 4.7e-11 72.4 69 52.2
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 4.7e-11 72.4 69 52.2
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 4.7e-11 72.4 69 52.2
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 4.7e-11 72.4 62 56.5
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 8.0e-11 71.6 66 54.5
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 8.0e-11 71.6 69 52.2
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 8.0e-11 71.6 69 52.2
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.0e-10 71.2 70 48.6
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.0e-10 71.2 70 52.9
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.0e-10 71.2 75 49.3
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.4e-10 70.9 69 50.7
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 1.4e-10 70.9 75 46.7
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.4e-10 70.9 66 51.5
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 1.8e-10 70.5 69 50.7
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 2.3e-10 70.1 69 50.7
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 2.3e-10 70.1 78 48.7
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.3e-10 70.1 81 46.9
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 2.3e-10 70.1 49 59.2
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 3.0e-10 69.7 71 47.9
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 3.0e-10 69.7 71 47.9
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 3.0e-10 69.7 84 45.2
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 3.0e-10 69.7 79 49.4
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.0e-10 69.7 69 52.2
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 3.0e-10 69.7 80 47.5
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 3.0e-10 69.7 77 48.1
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 4.0e-10 69.3 69 52.2
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 4.0e-10 69.3 69 53.6
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 5.2e-10 68.9 70 45.7
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 5.2e-10 68.9 70 50.0
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.8e-10 68.6 67 49.3
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.8e-10 68.6 67 49.3
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 8.8e-10 68.2 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.2e-09 67.8 60 60.0
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.5e-09 67.4 72 51.4
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.5e-09 67.4 69 52.2
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 2.0e-09 67.0 60 55.0
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 2.6e-09 66.6 69 47.8
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 2.6e-09 66.6 69 50.7
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 3.4e-09 66.2 68 51.5
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 3.4e-09 66.2 75 49.3
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 3.4e-09 66.2 81 43.2
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 3.4e-09 66.2 68 52.9
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 4.4e-09 65.9 78 43.6
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 5.7e-09 65.5 70 48.6
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 5.7e-09 65.5 85 44.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 5.7e-09 65.5 66 50.0
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 5.7e-09 65.5 78 44.9
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 1.3e-08 64.3 69 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.7e-08 63.9 60 61.7
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.7e-08 63.9 70 50.0
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 1.7e-08 63.9 68 51.5
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 4.8e-08 62.4 69 47.8
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 4.8e-08 62.4 69 47.8
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 4.8e-08 62.4 72 48.6
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 8.3e-08 61.6 73 47.9
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 8.3e-08 61.6 49 59.2
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 1.1e-07 61.2 68 45.6
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 1.1e-07 61.2 62 48.4
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 1.1e-07 61.2 78 44.9
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 1.4e-07 60.8 69 47.8
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.8e-07 60.5 69 43.5
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 2.4e-07 60.1 81 43.2
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 3.1e-07 59.7 66 47.0
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 3.1e-07 59.7 66 47.0
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 4.1e-07 59.3 81 43.2
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 4.1e-07 59.3 69 44.9
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 5.4e-07 58.9 67 49.3
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 5.4e-07 58.9 79 40.5
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 7.0e-07 58.5 49 57.1
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 7.0e-07 58.5 49 57.1
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 7.0e-07 58.5 49 57.1
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 7.0e-07 58.5 75 44.0
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 7.0e-07 58.5 49 57.1
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 9.1e-07 58.2 67 47.8
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 9.1e-07 58.2 78 46.2
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 1.6e-06 57.4 66 45.5
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.6e-06 57.4 64 46.9
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 3.5e-06 56.2 87 41.4
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.5e-06 55.8 57 43.9
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 4.5e-06 55.8 78 43.6
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 4.5e-06 55.8 67 47.8
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 5.9e-06 55.5 66 40.9


User provided reference genes

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