Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 3.8e-166 588.2 314 100.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 2.1e-23 114.0 241 38.6
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 9.7e-21 105.1 246 40.7
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.2e-20 104.0 234 42.7
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 6.3e-20 102.4 238 39.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.4e-19 100.5 237 37.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.4e-19 100.5 237 37.6
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.4e-19 100.5 251 41.8
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 3.1e-19 100.1 235 40.4
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.1e-19 99.8 238 39.1
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.3e-19 99.4 237 42.2
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 9.1e-19 98.6 238 37.4
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 9.1e-19 98.6 246 38.6
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 9.1e-19 98.6 238 40.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.5e-18 97.8 93 68.8
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.5e-18 97.8 93 68.8
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.0e-18 97.4 235 42.6
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.0e-18 97.4 234 41.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 2.0e-18 97.4 229 38.9
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-18 97.1 235 40.9
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.6e-18 97.1 235 41.7
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 3.4e-18 96.7 235 36.6
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 3.4e-18 96.7 233 42.1
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.4e-18 96.7 238 34.5
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 4.5e-18 96.3 129 55.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 5.9e-18 95.9 235 40.0
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.9e-18 95.9 230 40.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 5.9e-18 95.9 257 39.3
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.0e-17 95.1 237 40.5
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.0e-17 95.1 237 40.5
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.0e-17 95.1 238 38.7
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.0e-17 95.1 235 40.4
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.0e-17 95.1 118 60.2
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.3e-17 94.7 232 40.9
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.3e-17 94.7 239 39.7
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.7e-17 94.4 233 40.8
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.2e-17 94.0 235 40.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.9e-17 93.6 237 40.5
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 3.8e-17 93.2 233 39.9
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 5.0e-17 92.8 100 59.0
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 5.0e-17 92.8 234 36.8
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 5.0e-17 92.8 235 40.0
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 5.0e-17 92.8 116 51.7
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.0e-17 92.8 230 39.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 6.5e-17 92.4 93 68.8
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.5e-17 92.0 91 72.5
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.5e-17 92.0 91 71.4
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.5e-17 92.0 91 71.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.5e-17 92.0 230 40.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 1.4e-16 91.3 235 38.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.4e-16 91.3 100 58.0
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-16 91.3 91 71.4
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.9e-16 90.9 236 38.1
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.9e-16 90.9 236 35.6
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.5e-16 90.5 90 71.1
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.5e-16 90.5 90 71.1
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 2.5e-16 90.5 217 38.7
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.2e-16 90.1 236 39.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.2e-16 89.7 91 59.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 4.2e-16 89.7 93 72.0
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 5.5e-16 89.4 236 39.4
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 7.2e-16 89.0 257 33.5
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 9.4e-16 88.6 108 52.8
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 9.4e-16 88.6 237 39.7
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-15 88.2 90 70.0
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 1.2e-15 88.2 96 69.8
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.1e-15 87.4 232 37.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.1e-15 87.4 251 37.1
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.1e-15 87.4 95 68.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.7e-15 87.0 82 78.0
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.7e-15 87.0 97 64.9
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.6e-15 86.7 258 37.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.6e-15 86.7 108 52.8
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.6e-15 86.7 227 33.5
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 4.7e-15 86.3 240 39.6
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 6.1e-15 85.9 95 66.3
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 6.1e-15 85.9 241 41.1
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.0e-14 85.1 237 37.1
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.0e-14 85.1 85 62.4
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-14 84.0 78 79.5
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-14 84.0 78 79.5
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.3e-14 84.0 78 79.5
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.3e-14 84.0 232 38.8
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.0e-14 83.6 108 50.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 3.0e-14 83.6 108 50.9
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.0e-14 83.6 274 32.1
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.9e-14 83.2 95 63.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 3.9e-14 83.2 81 77.8
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 5.2e-14 82.8 93 58.1
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.1e-13 81.6 108 50.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.5e-13 81.3 112 50.0
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.5e-13 81.3 239 36.8
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.3e-13 80.1 113 49.6
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 3.3e-13 80.1 96 63.5
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.4e-13 79.7 81 61.7
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 5.7e-13 79.3 111 50.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 5.7e-13 79.3 111 50.5
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 5.7e-13 79.3 93 64.5
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.4e-13 79.0 80 60.0
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.4e-13 79.0 80 60.0
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 9.7e-13 78.6 106 49.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.3e-12 78.2 107 47.7
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.3e-12 78.2 110 50.0
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.3e-12 78.2 85 69.4
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.7e-12 77.8 88 53.4
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.7e-12 77.8 109 50.5
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.7e-12 77.8 80 60.0
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.8e-12 77.0 107 48.6
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 3.7e-12 76.6 105 61.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 4.8e-12 76.3 96 55.2
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 8.2e-12 75.5 100 64.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.8e-11 74.3 103 57.3
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.8e-11 74.3 279 35.5
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 2.4e-11 73.9 107 58.9
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 2.4e-11 73.9 75 61.3
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 4.1e-11 73.2 107 49.5
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 4.1e-11 73.2 238 37.4
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 5.3e-11 72.8 222 36.9
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 5.3e-11 72.8 84 69.0
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.1e-11 72.0 90 48.9
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.6e-10 71.2 88 48.9
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.6e-10 71.2 229 38.9
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.6e-10 71.2 82 70.7
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.6e-10 71.2 229 34.9
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-10 71.2 229 34.9
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.0e-10 70.9 89 49.4
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.0e-10 70.9 130 49.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.6e-10 70.5 229 34.5
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 3.5e-10 70.1 89 48.3
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 4.5e-10 69.7 107 44.9
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.5e-10 69.7 90 48.9
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 5.9e-10 69.3 83 51.8
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.9e-10 69.3 229 34.5
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 5.9e-10 69.3 260 33.8
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 7.7e-10 68.9 235 34.9
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 7.7e-10 68.9 81 69.1
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-09 68.2 229 34.5
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.3e-09 68.2 220 36.8
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.2e-09 67.4 229 34.1
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 2.2e-09 67.4 235 34.9
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.9e-09 67.0 83 67.5
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 2.9e-09 67.0 232 37.9
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 3.8e-09 66.6 233 35.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 3.8e-09 66.6 232 34.1
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 6.5e-09 65.9 231 39.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.1e-08 65.1 82 67.1
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.1e-08 65.1 232 32.3
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.9e-08 64.3 248 31.9
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.9e-08 64.3 231 39.4
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.9e-08 64.3 85 54.1
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.5e-08 63.9 104 55.8
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 3.2e-08 63.5 44 79.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 3.2e-08 63.5 84 65.5
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 7.2e-08 62.4 64 62.5
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 7.2e-08 62.4 81 63.0
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 9.4e-08 62.0 83 55.4
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 9.4e-08 62.0 85 48.2
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 9.4e-08 62.0 95 54.7
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.1e-07 60.8 94 55.3
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.6e-07 60.1 238 33.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.0e-07 58.9 245 32.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 8.0e-07 58.9 287 28.9
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.4e-06 58.2 245 32.7
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.3e-06 57.4 93 53.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.0e-06 57.0 94 54.3
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 5.2e-06 56.2 86 55.8


User provided reference genes

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