Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 7.4e-46 186.8 92 100.0
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.5e-19 97.8 88 54.5
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.9e-18 95.1 89 53.9
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.9e-18 95.1 89 53.9
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.8e-16 88.6 87 47.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.6e-16 88.2 88 51.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.8e-13 78.6 88 46.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.6e-11 72.8 88 42.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.5e-11 71.6 88 40.9
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.8e-11 70.5 88 42.0
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.7e-10 69.3 88 42.0
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.7e-10 69.3 88 43.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.3e-10 68.9 88 40.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.9e-10 68.6 88 43.2
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.9e-10 68.6 88 38.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.8e-10 68.2 87 36.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.8e-10 68.2 88 38.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.8e-10 68.2 88 38.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.8e-10 68.2 88 39.8
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 5.0e-10 67.8 88 39.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.0e-10 67.8 88 40.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 5.0e-10 67.8 85 43.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 6.6e-10 67.4 88 39.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 6.6e-10 67.4 88 42.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.5e-09 66.2 88 39.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.5e-09 66.2 88 37.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-09 66.2 88 40.9
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.9e-09 65.9 87 44.8
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.9e-09 65.9 88 39.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.5e-09 65.5 86 36.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.5e-09 65.5 88 39.8
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.3e-09 65.1 88 39.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.3e-09 65.1 88 40.9
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 7.3e-09 63.9 87 36.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 38.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 38.6
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 38.6
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 38.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 38.6
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 37.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 37.5
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 37.5
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.3e-09 63.9 88 35.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 9.5e-09 63.5 88 37.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 9.5e-09 63.5 88 36.4
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 9.5e-09 63.5 88 35.2
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 9.5e-09 63.5 88 36.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-08 63.2 88 36.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.6e-08 62.8 85 40.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.1e-08 62.4 87 36.8
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.6e-08 61.6 87 35.6
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.6e-08 61.6 88 36.4
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.1e-08 60.8 88 38.6
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.0e-07 60.1 85 37.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.0e-07 60.1 87 34.5
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-07 60.1 86 36.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.0e-07 60.1 88 39.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-07 60.1 89 39.3
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.8e-07 59.3 87 36.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.8e-07 59.3 85 37.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.3e-07 58.9 88 38.6
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.3e-07 58.9 85 38.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.0e-07 58.5 86 33.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.2e-07 57.8 86 32.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 6.8e-07 57.4 87 37.9
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 6.8e-07 57.4 85 37.6
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.8e-07 57.4 85 35.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.9e-07 57.0 85 37.6
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 8.9e-07 57.0 88 34.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.2e-06 56.6 86 34.9
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.5e-06 56.2 87 34.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-06 56.2 86 37.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.5e-06 56.2 84 35.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.0e-06 55.8 85 35.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 3.4e-06 55.1 87 34.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 3.4e-06 55.1 87 34.5
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.4e-06 54.7 98 34.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.4e-06 54.7 87 35.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.4e-06 54.7 86 37.2
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 4.4e-06 54.7 87 37.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 7.5e-06 53.9 87 34.5
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 7.5e-06 53.9 87 34.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 7.5e-06 53.9 85 36.5
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 9.8e-06 53.5 86 33.7


User provided reference genes

Program Settings