Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15274 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 2.8e-64 248.4 124 100.0
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 1.4e-15 86.7 47 76.6
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 7.0e-15 84.3 47 76.6
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 1.6e-14 83.2 47 70.2
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 1.6e-14 83.2 47 74.5
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 2.0e-14 82.8 57 61.4
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 2.7e-14 82.4 47 72.3
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 3.5e-14 82.0 44 75.0
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 4.5e-14 81.6 47 70.2
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 5.9e-14 81.3 47 72.3
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 5.9e-14 81.3 47 68.1
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 7.7e-14 80.9 47 72.3
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 1.0e-13 80.5 47 68.1
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 1.0e-13 80.5 54 61.1
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 1.0e-13 80.5 47 70.2
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 1.3e-13 80.1 47 70.2
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 1.3e-13 80.1 47 70.2
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 1.7e-13 79.7 47 70.2
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 1.7e-13 79.7 54 63.0
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 1.7e-13 79.7 52 63.5
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 2.2e-13 79.3 44 72.7
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 2.9e-13 79.0 47 68.1
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 2.9e-13 79.0 47 68.1
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 3.8e-13 78.6 47 68.1
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 5.0e-13 78.2 44 75.0
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 5.0e-13 78.2 55 61.8
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.0e-13 78.2 47 68.1
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.0e-13 78.2 47 68.1
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 6.5e-13 77.8 47 68.1
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 8.5e-13 77.4 44 72.7
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 8.5e-13 77.4 44 70.5
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 1.1e-12 77.0 47 66.0
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 1.1e-12 77.0 43 72.1
AagrBONN_evm.TU.Sc2ySwM_344.854 Anthoceros agrestis HOM05D005850 ORTHO05D007405 1.5e-12 76.6 43 74.4
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 1.5e-12 76.6 47 66.0
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 1.5e-12 76.6 47 66.0
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.5e-12 76.6 43 72.1
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 1.5e-12 76.6 46 69.6
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 1.9e-12 76.3 47 66.0
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 1.9e-12 76.3 49 65.3
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 2.5e-12 75.9 44 68.2
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 2.5e-12 75.9 46 69.6
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 2.5e-12 75.9 47 66.0
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 2.5e-12 75.9 47 66.0
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 2.5e-12 75.9 49 63.3
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 3.2e-12 75.5 44 65.9
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 3.2e-12 75.5 55 58.2
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 3.2e-12 75.5 47 63.8
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 4.2e-12 75.1 47 63.8
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 4.2e-12 75.1 44 68.2
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 4.2e-12 75.1 44 68.2
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 4.2e-12 75.1 44 68.2
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 4.2e-12 75.1 44 65.9
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 4.2e-12 75.1 43 72.1
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 4.2e-12 75.1 53 54.7
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 4.2e-12 75.1 47 66.0
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 5.5e-12 74.7 47 63.8
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 5.5e-12 74.7 47 63.8
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 5.5e-12 74.7 44 70.5
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 5.5e-12 74.7 44 68.2
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 5.5e-12 74.7 52 59.6
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 7.2e-12 74.3 52 59.6
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 7.2e-12 74.3 55 58.2
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 7.2e-12 74.3 71 53.5
MD02G1055000 Malus domestica HOM05D005850 ORTHO05D007405 7.2e-12 74.3 46 65.2
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 9.4e-12 73.9 46 65.2
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 9.4e-12 73.9 44 65.9
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 9.4e-12 73.9 46 67.4
MD02G1051000 Malus domestica HOM05D005850 ORTHO05D007405 9.4e-12 73.9 46 65.2
Hund09181 Selenicereus undatus HOM05D005850 ORTHO05D007405 9.4e-12 73.9 46 58.7
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 1.2e-11 73.6 47 59.6
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 1.2e-11 73.6 54 50.0
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 1.2e-11 73.6 47 63.8
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 1.6e-11 73.2 43 69.8
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 1.6e-11 73.2 46 67.4
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 2.1e-11 72.8 47 63.8
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 2.1e-11 72.8 47 63.8
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 2.1e-11 72.8 44 65.9
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 2.1e-11 72.8 71 53.5
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.7e-11 72.4 71 52.1
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.7e-11 72.4 71 52.1
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 2.7e-11 72.4 67 55.2
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 2.7e-11 72.4 68 54.4
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 3.6e-11 72.0 71 52.1
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.6e-11 72.0 71 52.1
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 3.6e-11 72.0 68 52.9
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 3.6e-11 72.0 44 65.9
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 4.7e-11 71.6 43 65.1
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 6.1e-11 71.2 43 69.8
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 6.1e-11 71.2 44 65.9
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 6.1e-11 71.2 71 52.1
AUR62033401 Chenopodium quinoa HOM05D005850 ORTHO05D007405 8.0e-11 70.9 46 54.3
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 8.0e-11 70.9 71 50.7
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 8.0e-11 70.9 71 50.7
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 8.0e-11 70.9 46 60.9
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 8.0e-11 70.9 44 65.9
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 1.0e-10 70.5 43 65.1
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 1.4e-10 70.1 51 56.9
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 1.8e-10 69.7 45 62.2
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 3.0e-10 68.9 56 58.9
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 4.4e-09 65.1 44 63.6
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 5.7e-09 64.7 51 56.9
MD02G1052000 Malus domestica HOM05D005850 ORTHO05D007405 7.5e-09 64.3 46 60.9
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 1.3e-08 63.5 57 49.1
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 5.4e-07 58.2 55 52.7


User provided reference genes

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