Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 6.1e-129 464.2 232 100.0
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 5.7e-26 122.1 157 49.0
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 2.8e-25 119.8 138 52.2
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 6.3e-25 118.6 135 52.6
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 6.3e-25 118.6 128 53.9
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 6.3e-25 118.6 146 50.0
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.4e-24 117.5 159 47.8
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 1.8e-24 117.1 155 49.0
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 2.4e-24 116.7 141 51.8
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 2.4e-24 116.7 128 53.1
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 2.4e-24 116.7 135 52.6
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 3.1e-24 116.3 163 42.9
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 3.1e-24 116.3 133 54.1
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 4.1e-24 115.9 108 59.3
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 5.3e-24 115.5 142 52.1
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 5.3e-24 115.5 142 52.1
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 6.9e-24 115.2 135 51.1
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 6.9e-24 115.2 111 56.8
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 9.0e-24 114.8 145 50.3
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 9.0e-24 114.8 145 50.3
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 9.0e-24 114.8 145 50.3
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 9.0e-24 114.8 147 49.0
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 9.0e-24 114.8 152 47.4
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.2e-23 114.4 135 51.9
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.2e-23 114.4 96 65.6
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.2e-23 114.4 167 44.9
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 1.5e-23 114.0 157 49.0
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 1.5e-23 114.0 115 56.5
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 2.0e-23 113.6 123 52.8
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 2.0e-23 113.6 115 55.7
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 2.6e-23 113.2 111 55.9
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 3.4e-23 112.8 131 51.1
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 3.4e-23 112.8 131 51.1
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 3.4e-23 112.8 112 58.0
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 3.4e-23 112.8 160 45.6
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 4.5e-23 112.5 159 45.9
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 4.5e-23 112.5 156 46.2
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 4.5e-23 112.5 115 56.5
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 4.5e-23 112.5 112 58.0
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 5.9e-23 112.1 108 58.3
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 7.6e-23 111.7 113 55.8
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 7.6e-23 111.7 112 57.1
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 7.6e-23 111.7 113 55.8
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 1.0e-22 111.3 131 51.1
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 1.0e-22 111.3 137 49.6
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 1.0e-22 111.3 96 63.5
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 1.3e-22 110.9 164 43.9
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 1.3e-22 110.9 111 57.7
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 1.7e-22 110.5 145 48.3
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 2.2e-22 110.2 110 57.3
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 2.2e-22 110.2 110 57.3
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 2.2e-22 110.2 114 56.1
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 2.9e-22 109.8 153 45.8
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 2.9e-22 109.8 99 59.6
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 2.9e-22 109.8 146 48.6
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 2.9e-22 109.8 162 46.3
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 3.8e-22 109.4 108 55.6
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 3.8e-22 109.4 135 48.1
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 3.8e-22 109.4 114 56.1
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 5.0e-22 109.0 102 59.8
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 5.0e-22 109.0 103 58.3
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 5.0e-22 109.0 147 45.6
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 5.0e-22 109.0 114 55.3
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 6.5e-22 108.6 116 55.2
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 6.5e-22 108.6 148 45.3
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 6.5e-22 108.6 158 45.6
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 8.5e-22 108.2 146 49.3
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 8.5e-22 108.2 111 55.9
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 8.5e-22 108.2 164 43.9
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 1.1e-21 107.8 158 44.9
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.1e-21 107.8 123 52.0
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 1.1e-21 107.8 115 53.0
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 1.1e-21 107.8 111 57.7
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 1.4e-21 107.5 154 43.5
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 1.4e-21 107.5 106 57.5
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 1.9e-21 107.1 110 54.5
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 1.9e-21 107.1 112 54.5
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 1.9e-21 107.1 163 44.2
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 2.5e-21 106.7 112 54.5
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 2.5e-21 106.7 121 52.1
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 3.2e-21 106.3 164 43.3
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 3.2e-21 106.3 164 43.3
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 3.2e-21 106.3 103 58.3
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 4.2e-21 105.9 112 55.4
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 4.2e-21 105.9 151 45.7
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 4.2e-21 105.9 109 56.9
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 4.2e-21 105.9 106 56.6
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 4.2e-21 105.9 106 56.6
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 5.5e-21 105.5 156 44.9
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 5.5e-21 105.5 109 56.0
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 5.5e-21 105.5 160 43.8
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 5.5e-21 105.5 168 41.1
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 7.2e-21 105.1 152 46.1
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 9.4e-21 104.8 152 44.7
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 9.4e-21 104.8 120 51.7
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 9.4e-21 104.8 112 54.5
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 9.4e-21 104.8 112 54.5
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 9.4e-21 104.8 112 54.5
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 1.2e-20 104.4 102 57.8
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 1.2e-20 104.4 152 45.4
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 1.2e-20 104.4 152 45.4
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 1.2e-20 104.4 152 45.4
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 1.2e-20 104.4 112 55.4
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.2e-20 104.4 112 54.5
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 1.2e-20 104.4 167 41.3
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 1.2e-20 104.4 106 55.7
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 1.6e-20 104.0 112 56.2
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 1.6e-20 104.0 103 57.3
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 1.6e-20 104.0 164 42.7
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.6e-20 104.0 109 56.0
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 1.6e-20 104.0 122 50.8
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 2.7e-20 103.2 111 55.0
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 3.6e-20 102.8 152 49.3
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 4.6e-20 102.4 151 44.4
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 4.6e-20 102.4 141 44.0
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 6.1e-20 102.1 112 53.6
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 6.1e-20 102.1 146 47.9
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 6.1e-20 102.1 102 55.9
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 7.9e-20 101.7 156 44.2
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 7.9e-20 101.7 156 44.2
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 7.9e-20 101.7 123 51.2
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 7.9e-20 101.7 147 45.6
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 1.0e-19 101.3 105 57.1
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 1.4e-19 100.9 109 53.2
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 3.0e-19 99.8 117 52.1
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 3.0e-19 99.8 107 51.4
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 3.0e-19 99.8 113 53.1
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 3.9e-19 99.4 104 51.9
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 6.7e-19 98.6 114 48.2
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 8.8e-19 98.2 86 60.5
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.5e-18 97.4 117 50.4
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 1.5e-18 97.4 117 50.4
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 1.9e-18 97.1 104 52.9
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 1.9e-18 97.1 109 50.5
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 1.9e-18 97.1 118 50.8
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 5.7e-18 95.5 126 46.0
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.7e-17 94.0 107 55.1
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 4.1e-16 89.4 111 47.7
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 4.1e-16 89.4 99 49.5
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 5.3e-16 89.0 100 55.0
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 2.2e-14 83.6 132 41.7
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 3.8e-14 82.8 109 48.6
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 1.4e-13 80.9 108 48.1
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.4e-13 80.9 90 56.7
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 3.2e-13 79.7 109 44.0
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 3.2e-13 79.7 103 50.5
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 2.7e-12 76.6 76 55.3
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 8.8e-11 71.6 51 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 1.1e-10 71.2 88 50.0
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 1.2e-07 61.2 91 45.1


User provided reference genes

Program Settings