Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15139 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.5e-144 515.4 252 100.0
SEGI_41161 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 3.4e-133 478.4 252 92.5
SEGI_19755 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.1e-127 459.1 252 86.9
SEGI_25741 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.7e-121 439.5 252 84.1
SEGI_17410 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.1e-118 430.3 252 83.3
SEGI_18723 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 7.6e-117 424.1 252 81.0
SEGI_17858 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 8.2e-87 324.3 252 59.9
SEGI_17565 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.4e-86 323.6 252 60.3
SEGI_24454 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 4.0e-86 322.0 252 60.7
SEGI_05285 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 6.5e-52 208.4 112 87.5
SMO147G0052 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 4.0e-49 199.1 257 44.7
Mapoly0001s0419 Marchantia polymorpha HOM05D010140 ORTHO05D011490 9.7e-48 194.5 249 39.4
SEGI_33304 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.2e-42 177.6 236 43.6
SMO364G0124 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 7.5e-40 168.3 252 39.7
SEGI_21178 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 2.7e-37 159.8 219 42.0
Pp3c3_13640 Physcomitrium patens HOM05D010140 ORTHO05D011490 2.8e-26 123.2 216 34.7
Cre02.g095750 Chlamydomonas reinhardtii HOM05D010140 ORTHO05D011490 2.3e-25 120.2 299 30.1
SEGI_08459 Sequoiadendron giganteum HOM05D010140 ORTHO05D011490 1.5e-24 117.5 63 82.5
SMO364G0147 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 4.6e-21 105.9 251 29.9
SMO197G0039 Selaginella moellendorffii HOM05D010140 ORTHO05D011490 1.1e-19 101.3 186 35.5
SEGI_30203 Sequoiadendron giganteum HOM05D002878 ORTHO05D011490 3.7e-15 86.3 157 37.6
Pp3c3_7450 Physcomitrium patens HOM05D002878 ORTHO05D011490 1.4e-14 84.3 193 34.2
SMO337G0071 Selaginella moellendorffii HOM05D002878 ORTHO05D011490 9.5e-11 71.6 154 31.8
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 1.2e-10 71.2 122 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3274 Anthoceros agrestis HOM05D002878 ORTHO05D011490 3.6e-10 69.7 156 28.8
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 1.4e-09 67.8 109 39.4
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 2.3e-09 67.0 116 38.8
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 3.1e-09 66.6 115 37.4
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 4.0e-09 66.2 115 39.1
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 4.0e-09 66.2 112 39.3
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 5.2e-09 65.9 112 40.2
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 5.2e-09 65.9 112 38.4
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 5.2e-09 65.9 112 38.4
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 6.8e-09 65.5 114 36.8
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 6.8e-09 65.5 112 40.2
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 6.8e-09 65.5 135 36.3
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 1.2e-08 64.7 115 38.3
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 1.2e-08 64.7 112 37.5
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 1.2e-08 64.7 117 41.9
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 2.0e-08 63.9 112 39.3
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 2.0e-08 63.9 112 38.4
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 2.0e-08 63.9 112 36.6
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.0e-08 63.9 136 36.0
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 2.0e-08 63.9 112 38.4
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 2.0e-08 63.9 136 36.0
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 2.0e-08 63.9 112 38.4
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 2.0e-08 63.9 100 41.0
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 2.6e-08 63.5 112 39.3
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 2.6e-08 63.5 112 37.5
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 2.6e-08 63.5 115 40.9
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 2.6e-08 63.5 112 39.3
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 2.6e-08 63.5 112 39.3
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 3.4e-08 63.2 112 38.4
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.4e-08 63.2 115 37.4
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.4e-08 63.2 131 32.8
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 3.4e-08 63.2 174 28.7
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 4.4e-08 62.8 115 38.3
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 4.4e-08 62.8 112 39.3
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 4.4e-08 62.8 112 37.5
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 4.4e-08 62.8 112 37.5
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 4.4e-08 62.8 112 37.5
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 4.4e-08 62.8 136 33.8
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 4.4e-08 62.8 112 39.3
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 4.4e-08 62.8 110 35.5
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 5.8e-08 62.4 112 39.3
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 5.8e-08 62.4 98 39.8
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 5.8e-08 62.4 112 39.3
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 5.8e-08 62.4 112 39.3
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 5.8e-08 62.4 112 38.4
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 5.8e-08 62.4 115 39.1
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 5.8e-08 62.4 120 36.7
TAR628G1519 Trochodendron aralioides HOM05D002878 ORTHO05D003649 5.8e-08 62.4 112 38.4
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 7.6e-08 62.0 115 37.4
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 7.6e-08 62.0 112 38.4
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 7.6e-08 62.0 118 38.1
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 7.6e-08 62.0 112 37.5
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 7.6e-08 62.0 113 38.1
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 9.9e-08 61.6 112 38.4
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 9.9e-08 61.6 112 38.4
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 9.9e-08 61.6 112 35.7
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 9.9e-08 61.6 115 38.3
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 9.9e-08 61.6 102 39.2
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 9.9e-08 61.6 132 35.6
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 1.3e-07 61.2 135 35.6
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 1.3e-07 61.2 112 39.3
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 1.3e-07 61.2 112 39.3
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 1.3e-07 61.2 112 37.5
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 1.3e-07 61.2 112 37.5
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 1.3e-07 61.2 115 37.4
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.3e-07 61.2 115 38.3
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 39.3
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 38.4
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 38.4
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 1.7e-07 60.8 126 35.7
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 38.4
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.7e-07 60.8 105 39.0
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 38.4
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 1.7e-07 60.8 100 40.0
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 1.7e-07 60.8 112 36.6
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 2.2e-07 60.5 112 38.4
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 2.2e-07 60.5 112 38.4
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 2.2e-07 60.5 110 38.2
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 2.2e-07 60.5 137 36.5
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.9e-07 60.1 112 37.5
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 2.9e-07 60.1 112 37.5
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 2.9e-07 60.1 102 39.2
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 2.9e-07 60.1 110 36.4
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 2.9e-07 60.1 125 36.0
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 2.9e-07 60.1 112 35.7
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 2.9e-07 60.1 115 37.4
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 2.9e-07 60.1 105 38.1
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 2.9e-07 60.1 100 40.0
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 3.7e-07 59.7 115 37.4
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 38.4
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 38.4
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 38.4
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 37.5
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 37.5
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 3.7e-07 59.7 112 37.5
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 3.7e-07 59.7 111 37.8
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 3.7e-07 59.7 102 39.2
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 4.9e-07 59.3 102 40.2
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 4.9e-07 59.3 112 38.4
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.9e-07 59.3 102 38.2
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 4.9e-07 59.3 105 36.2
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 4.9e-07 59.3 102 39.2
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 4.9e-07 59.3 100 40.0
CBR_g2783 Chara braunii HOM05D002878 ORTHO05D003649 6.4e-07 58.9 77 44.2
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 6.4e-07 58.9 102 40.2
Hma1.2p1_0017F.1_g011360 Hydrangea macrophylla HOM05D002878 ORTHO05D003649 6.4e-07 58.9 102 40.2
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 6.4e-07 58.9 112 38.4
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 6.4e-07 58.9 109 37.6
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 6.4e-07 58.9 110 36.4
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 6.4e-07 58.9 102 38.2
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 6.4e-07 58.9 110 36.4
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 6.4e-07 58.9 112 36.6
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 1.1e-06 58.2 109 37.6
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 1.4e-06 57.8 123 31.7
MCO08G194 Micromonas commoda HOM05D002878 ORTHO05D003649 1.4e-06 57.8 99 36.4
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 1.4e-06 57.8 143 32.9
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.9e-06 57.4 97 41.2
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 1.9e-06 57.4 110 37.3
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 2.4e-06 57.0 116 35.3
ATR0605G380 Amborella trichopoda HOM05D002878 ORTHO05D003649 2.4e-06 57.0 116 39.7
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 2.4e-06 57.0 100 39.0
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.4e-06 57.0 100 39.0
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.4e-06 57.0 102 37.3
PRCOL_00004396 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 2.4e-06 57.0 150 28.7
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 3.2e-06 56.6 110 36.4
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 3.2e-06 56.6 112 36.6
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 4.1e-06 56.2 100 39.0
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 5.4e-06 55.8 116 33.6
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 5.4e-06 55.8 116 33.6
MBI01_g01345_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 5.4e-06 55.8 102 40.2
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 5.4e-06 55.8 140 30.7
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 7.1e-06 55.5 135 32.6
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 9.2e-06 55.1 116 33.6
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 9.2e-06 55.1 136 34.6


User provided reference genes

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