Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15086 Sequoiadendron giganteum HOM05D003131 ORTHO05D003761 4.1e-50 201.1 99 100.0
TAR629G1259 Trochodendron aralioides HOM05D003131 ORTHO05D003761 5.0e-16 87.8 66 63.6
PSO541G2817 Papaver somniferum HOM05D003131 ORTHO05D003761 7.3e-15 84.0 66 59.1
PSO675G8799 Papaver somniferum HOM05D003131 ORTHO05D003761 7.3e-15 84.0 66 59.1
Sc16g0006370 Simmondsia chinensis HOM05D003131 ORTHO05D003761 2.1e-14 82.4 66 60.6
HPP92_015947 Vanilla planifolia HOM05D003131 ORTHO05D003761 4.7e-14 81.3 67 59.7
Lsat_1_v5_gn_7_108961 Lactuca sativa HOM05D003131 ORTHO05D003761 1.1e-13 80.1 67 55.2
Os07g0524100 Oryza sativa ssp. japonica HOM05D003131 ORTHO05D003761 1.1e-13 80.1 66 60.6
Aqoxy4G01971 Aquilegia oxysepala HOM05D003131 ORTHO05D003761 1.8e-13 79.3 66 56.1
Lj8A166G89 Lonicera japonica HOM05D003131 ORTHO05D003761 1.8e-13 79.3 66 59.1
HPP92_015952 Vanilla planifolia HOM05D003131 ORTHO05D003761 1.8e-13 79.3 66 59.1
Hund23293 Selenicereus undatus HOM05D003131 ORTHO05D003761 5.2e-13 77.8 66 62.1
ATR0697G255 Amborella trichopoda HOM05D003131 ORTHO05D003761 6.8e-13 77.4 66 54.5
ECA236G2341 Erigeron canadensis HOM05D003131 ORTHO05D003761 8.9e-13 77.0 67 53.7
Duzib268G0498 Durio zibethinus HOM05D003131 ORTHO05D003761 1.2e-12 76.6 66 57.6
Gohir.A13G140500 Gossypium hirsutum HOM05D003131 ORTHO05D003761 1.2e-12 76.6 66 54.5
Zm00001eb106180 Zea mays HOM05D003131 ORTHO05D003761 1.5e-12 76.3 66 57.6
Eucgr.F03438 Eucalyptus grandis HOM05D003131 ORTHO05D003761 2.0e-12 75.9 66 56.1
Duzib170G1176 Durio zibethinus HOM05D003131 ORTHO05D003761 2.6e-12 75.5 66 54.5
TAR627G1168 Trochodendron aralioides HOM05D003131 ORTHO05D003761 2.6e-12 75.5 66 54.5
GSVIVG01001983001 Vitis vinifera HOM05D003131 ORTHO05D003761 2.6e-12 75.5 67 52.2
Lj1A867T32 Lonicera japonica HOM05D003131 ORTHO05D003761 3.4e-12 75.1 66 57.6
Oeu062607.1 Olea europaea HOM05D003131 ORTHO05D003761 3.4e-12 75.1 67 56.7
DCAR_010029 Daucus carota HOM05D003131 ORTHO05D003761 5.8e-12 74.3 64 54.7
Dinv40726 Davidia involucrata HOM05D003131 ORTHO05D003761 5.8e-12 74.3 66 54.5
Potri.011G135500 Populus trichocarpa HOM05D003131 ORTHO05D003761 5.8e-12 74.3 66 56.1
Ah.06g182980 Amaranthus hybridus HOM05D003131 ORTHO05D003761 7.5e-12 73.9 66 56.1
Haze_09619 Corylus avellana HOM05D003131 ORTHO05D003761 7.5e-12 73.9 64 57.8
CAN.G337.99 Capsicum annuum HOM05D003131 ORTHO05D003761 9.9e-12 73.6 66 54.5
Gohir.D13G145300 Gossypium hirsutum HOM05D003131 ORTHO05D003761 9.9e-12 73.6 66 51.5
Gorai.013G163100 Gossypium raimondii HOM05D003131 ORTHO05D003761 9.9e-12 73.6 66 51.5
Thecc.07G050200 Theobroma cacao HOM05D003131 ORTHO05D003761 9.9e-12 73.6 66 54.5
MSTRG.15165 Avicennia marina HOM05D003131 ORTHO05D003761 1.3e-11 73.2 66 57.6
CSS0010531 Camellia sinensis var. sinensis HOM05D003131 ORTHO05D003761 1.3e-11 73.2 66 54.5
CANSAT11G2205 Cannabis sativa HOM05D003131 ORTHO05D003761 1.3e-11 73.2 66 53.0
Cfa020401 Carpinus fangiana HOM05D003131 ORTHO05D003761 1.3e-11 73.2 64 57.8
HanXRQChr11g0337911 Helianthus annuus HOM05D003131 ORTHO05D003761 1.3e-11 73.2 67 53.7
Manes.03G127900 Manihot esculenta HOM05D003131 ORTHO05D003761 1.3e-11 73.2 66 56.1
MELO3C018096.2 Cucumis melo HOM05D003131 ORTHO05D003761 1.7e-11 72.8 66 51.5
Migut.M01796 Erythranthe guttata HOM05D003131 ORTHO05D003761 1.7e-11 72.8 67 50.7
CDE05G1183 Ceratophyllum demersum HOM05D003131 ORTHO05D003761 2.2e-11 72.4 67 50.7
CsaV3_3G023160 Cucumis sativus L. HOM05D003131 ORTHO05D003761 2.2e-11 72.4 66 53.0
Duzib213G0427 Durio zibethinus HOM05D003131 ORTHO05D003761 2.9e-11 72.0 66 51.5
Sed0015465 Sechium edule HOM05D003131 ORTHO05D003761 2.9e-11 72.0 63 57.1
unitig_0.g755 Utricularia gibba HOM05D003131 ORTHO05D003761 2.9e-11 72.0 66 51.5
SMO239G0034 Selaginella moellendorffii HOM05D003131 ORTHO05D003761 3.7e-11 71.6 67 50.7
EL10Ac4g07936 Beta vulgaris HOM05D003131 ORTHO05D003761 4.9e-11 71.2 66 56.1
Potri.001G419300 Populus trichocarpa HOM05D003131 ORTHO05D003761 4.9e-11 71.2 66 53.0
Nitab4.5_0003452g0020 Nicotiana tabacum HOM05D003131 ORTHO05D003761 8.3e-11 70.5 66 51.5
PGSC0003DMG400001047 Solanum tuberosum HOM05D003131 ORTHO05D003761 8.3e-11 70.5 66 54.5
ClCG05G014630 Citrullus lanatus HOM05D003131 ORTHO05D003761 1.1e-10 70.1 66 51.5
Gorai.009G426100 Gossypium raimondii HOM05D003131 ORTHO05D003761 1.1e-10 70.1 66 53.0
Ah.04g165590 Amaranthus hybridus HOM05D003131 ORTHO05D003761 1.4e-10 69.7 66 54.5
Lalb_Chr01g0006071 Lupinus albus HOM05D003131 ORTHO05D003761 1.4e-10 69.7 66 50.0
Sopen07g032400 Solanum pennellii HOM05D003131 ORTHO05D003761 1.9e-10 69.3 66 53.0
BcaB03g12526 Brassica carinata HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 48.5
Gohir.A04G020700 Gossypium hirsutum HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 51.5
Gohir.D05G366000 Gossypium hirsutum HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 51.5
Peaxi162Scf00450g00865 Petunia axillaris HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 51.5
Sabra11G0121200 Salix brachista HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 50.0
Solyc07g064250.3 Solanum lycopersicum HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 53.0
SGA_v2.0_scaffold9G05050 Striga asiatica HOM05D003131 ORTHO05D003761 2.4e-10 68.9 66 53.0
arahy.Tifrunner.gnm1.ann1.78MI69 Arachis hypogaea HOM05D003131 ORTHO05D003761 3.2e-10 68.6 66 48.5
AUR62020531 Chenopodium quinoa HOM05D003131 ORTHO05D003761 3.2e-10 68.6 66 53.0
Ciclev10008134m.g Citrus clementina HOM05D003131 ORTHO05D003761 3.2e-10 68.6 67 55.2
MD11G1224300 Malus domestica HOM05D003131 ORTHO05D003761 3.2e-10 68.6 66 50.0
MSTRG.6898 Avicennia marina HOM05D003131 ORTHO05D003761 4.1e-10 68.2 67 47.8
Prupe.4G205600 Prunus persica HOM05D003131 ORTHO05D003761 4.1e-10 68.2 66 50.0
Sabra16G0284800 Salix brachista HOM05D003131 ORTHO05D003761 4.1e-10 68.2 66 54.5
arahy.Tifrunner.gnm1.ann1.FX4D46 Arachis hypogaea HOM05D003131 ORTHO05D003761 5.4e-10 67.8 66 48.5
AUR62043223 Chenopodium quinoa HOM05D003131 ORTHO05D003761 5.4e-10 67.8 66 53.0
HanXRQChr03g0077341 Helianthus annuus HOM05D003131 ORTHO05D003761 5.4e-10 67.8 67 49.3
Oeu032446.3 Olea europaea HOM05D003131 ORTHO05D003761 5.4e-10 67.8 66 53.0
Pp3c14_18940 Physcomitrium patens HOM05D003131 ORTHO05D003761 5.4e-10 67.8 69 47.8
SHI17364 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-10 67.8 67 53.7
Actinidia09927 Actinidia chinensis HOM05D003131 ORTHO05D003761 7.1e-10 67.4 66 51.5
Ca_01736_v3 Cicer arietinum L. HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 48.5
FvH4_3g21990 Fragaria vesca HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 50.0
FAN11G1541 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 50.0
FAN16G2989 Fragaria x ananassa HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 50.0
MD03G1209500 Malus domestica HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 48.5
Phvul.011G139400 Phaseolus vulgaris HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 50.0
PGR031G0436 Punica granatum HOM05D003131 ORTHO05D003761 9.2e-10 67.0 66 54.5
THA.LOC104812532 Tarenaya hassleriana HOM05D003131 ORTHO05D003761 9.2e-10 67.0 67 46.3
QL08p012668 Quercus lobata HOM05D003131 ORTHO05D003761 1.2e-09 66.6 64 53.1
RcHm_v2.0_Chr5g0037841 Rosa chinensis HOM05D003131 ORTHO05D003761 1.2e-09 66.6 66 51.5
TWI39G0275 Tripterygium wilfordii HOM05D003131 ORTHO05D003761 1.2e-09 66.6 66 50.0
A08p20550 Brassica napus HOM05D003131 ORTHO05D003761 1.6e-09 66.2 66 50.0
BraA08t34011Z Brassica rapa HOM05D003131 ORTHO05D003761 1.6e-09 66.2 66 50.0
Cc05_g13370 Coffea canephora HOM05D003131 ORTHO05D003761 1.6e-09 66.2 66 53.0
THA.LOC104817882 Tarenaya hassleriana HOM05D003131 ORTHO05D003761 1.6e-09 66.2 66 47.0
TPR.G19970 Trifolium pratense HOM05D003131 ORTHO05D003761 1.6e-09 66.2 66 47.0
FAN25G0818 Fragaria x ananassa HOM05D003131 ORTHO05D003761 2.1e-09 65.9 66 50.0
CiPaw.11G185300 Carya illinoinensis HOM05D003131 ORTHO05D003761 2.7e-09 65.5 66 51.5
FAN21G2752 Fragaria x ananassa HOM05D003131 ORTHO05D003761 2.7e-09 65.5 66 48.5
Glyma.06G270200 Glycine max HOM05D003131 ORTHO05D003761 2.7e-09 65.5 66 48.5
Glyma.12G134500 Glycine max HOM05D003131 ORTHO05D003761 2.7e-09 65.5 66 48.5
Lsat_1_v5_gn_4_167840 Lactuca sativa HOM05D002663 ORTHO05D002988 2.7e-09 65.5 66 51.5
BcaC07g38270 Brassica carinata HOM05D003131 ORTHO05D003761 3.5e-09 65.1 66 45.5
C08p10170 Brassica napus HOM05D003131 ORTHO05D003761 3.5e-09 65.1 66 45.5
BolC8t48696H Brassica oleracea HOM05D003131 ORTHO05D003761 3.5e-09 65.1 66 45.5
AT4G27080 Arabidopsis thaliana HOM05D003131 ORTHO05D003761 4.6e-09 64.7 66 45.5
VMungo1127G1954 Vigna mungo HOM05D003131 ORTHO05D003761 4.6e-09 64.7 66 48.5
Carub.0007s1376 Capsella rubella HOM05D003131 ORTHO05D003761 6.0e-09 64.3 66 43.9
Lsat_1_v5_gn_5_81680 Lactuca sativa HOM05D003131 ORTHO05D003761 6.0e-09 64.3 66 50.0
Nn1g07062 Nelumbo nucifera HOM05D003131 ORTHO05D003761 6.0e-09 64.3 66 51.5
TPR.G25904 Trifolium pratense HOM05D003131 ORTHO05D003761 6.0e-09 64.3 66 47.0
AL7G25720 Arabidopsis lyrata HOM05D003131 ORTHO05D003761 7.8e-09 63.9 66 45.5
Glyma.12G213100 Glycine max HOM05D003131 ORTHO05D003761 7.8e-09 63.9 66 48.5
Glyma.13G288600 Glycine max HOM05D003131 ORTHO05D003761 7.8e-09 63.9 66 48.5
Lj3g0017739 Lotus japonicus HOM05D003131 ORTHO05D003761 7.8e-09 63.9 66 47.0
TWI38G0096 Tripterygium wilfordii HOM05D003131 ORTHO05D003761 7.8e-09 63.9 65 49.2
Sed0022762 Sechium edule HOM05D003131 ORTHO05D003761 1.0e-08 63.5 62 50.0
MBI02_g23958_MAGBIO Magnolia biondii HOM05D003131 ORTHO05D003761 1.3e-08 63.2 62 54.8
Mapoly0033s0073 Marchantia polymorpha HOM05D003131 ORTHO05D003761 1.3e-08 63.2 67 46.3
Ca_18858_v3 Cicer arietinum L. HOM05D003131 ORTHO05D003761 1.7e-08 62.8 66 45.5
Thhalv10025074m.g Eutrema salsugineum HOM05D003131 ORTHO05D003761 1.7e-08 62.8 66 45.5
Lalb_Chr14g0366231 Lupinus albus HOM05D003131 ORTHO05D003761 1.7e-08 62.8 66 43.9
RhsimUnG0252300 Rhododendron simsii HOM05D003131 ORTHO05D003761 2.3e-08 62.4 60 55.0
ECA240G3179 Erigeron canadensis HOM05D003131 ORTHO05D003761 3.0e-08 62.0 66 50.0
Lalb_Chr19g0134801 Lupinus albus HOM05D003131 ORTHO05D003761 3.0e-08 62.0 65 46.2
vmacro09740 Vaccinium macrocarpon HOM05D003131 ORTHO05D003761 3.0e-08 62.0 66 50.0
vmacro11756 Vaccinium macrocarpon HOM05D003131 ORTHO05D003761 3.0e-08 62.0 66 47.0
Ciclev10023649m.g Citrus clementina HOM05D003131 ORTHO05D002186 3.9e-08 61.6 68 50.0
Lsat_1_v5_gn_5_4920 Lactuca sativa HOM05D003131 ORTHO05D003761 3.9e-08 61.6 67 43.3
Lj3g0001988 Lotus japonicus HOM05D003131 ORTHO05D003761 3.9e-08 61.6 66 47.0
VMungo1080G0160 Vigna mungo HOM05D003131 ORTHO05D003761 3.9e-08 61.6 66 45.5
Aa31LG8G7370 Aethionema arabicum HOM05D003131 ORTHO05D003761 5.1e-08 61.2 66 47.0
CARHR234730 Cardamine hirsuta HOM05D003131 ORTHO05D003761 5.1e-08 61.2 66 43.9
Thhalv10020619m.g Eutrema salsugineum HOM05D003131 ORTHO05D003761 6.6e-08 60.8 67 44.8
Atru.chr2.3237 Acer truncatum HOM05D003131 ORTHO05D003761 8.6e-08 60.5 67 49.3
arahy.Tifrunner.gnm1.ann1.B15YH7 Arachis hypogaea HOM05D003131 ORTHO05D003761 8.6e-08 60.5 63 47.6
Cpa.g.sc97.49 Carica papaya HOM05D003131 ORTHO05D003761 8.6e-08 60.5 64 46.9
C07p55000 Brassica napus HOM05D003131 ORTHO05D003761 1.1e-07 60.1 66 43.9
BolC7t46012H Brassica oleracea HOM05D003131 ORTHO05D003761 1.1e-07 60.1 66 43.9
Medtr4g080800 Medicago truncatula HOM05D003131 ORTHO05D003761 1.1e-07 60.1 62 50.0
Psat7g162480 Pisum sativum HOM05D003131 ORTHO05D003761 1.1e-07 60.1 66 45.5
Aa31LG5G10320 Aethionema arabicum HOM05D003131 ORTHO05D003761 1.5e-07 59.7 66 40.9
arahy.Tifrunner.gnm1.ann1.E892WZ Arachis hypogaea HOM05D003131 ORTHO05D003761 1.5e-07 59.7 63 47.6
BcaC06g32712 Brassica carinata HOM05D003131 ORTHO05D003761 1.5e-07 59.7 66 43.9
Phvul.005G092800 Phaseolus vulgaris HOM05D003131 ORTHO05D003761 1.9e-07 59.3 66 43.9
Sp3g18580 Schrenkiella parvula HOM05D003131 ORTHO05D003761 2.5e-07 58.9 66 43.9
Sp7g25050 Schrenkiella parvula HOM05D003131 ORTHO05D003761 2.5e-07 58.9 66 43.9
A03p57070 Brassica napus HOM05D003131 ORTHO05D003761 3.3e-07 58.5 66 42.4
BraA03t14777Z Brassica rapa HOM05D003131 ORTHO05D003761 3.3e-07 58.5 66 42.4
Gohir.A08G019908 Gossypium hirsutum HOM05D003131 ORTHO05D003761 3.3e-07 58.5 66 43.9
Psat5g252160 Pisum sativum HOM05D003131 ORTHO05D003761 5.6e-07 57.8 66 42.4
BraA03t13334Z Brassica rapa HOM05D003131 ORTHO05D003761 7.3e-07 57.4 66 42.4
BcaC01g03549 Brassica carinata HOM05D003131 ORTHO05D003761 9.5e-07 57.0 66 42.4
A03p41810 Brassica napus HOM05D003131 ORTHO05D003761 9.5e-07 57.0 66 42.4
C03p51190 Brassica napus HOM05D003131 ORTHO05D003761 9.5e-07 57.0 66 42.4
BolC3t17408H Brassica oleracea HOM05D003131 ORTHO05D003761 9.5e-07 57.0 66 42.4
Medtr2g083260 Medicago truncatula HOM05D003131 ORTHO05D003761 1.2e-06 56.6 66 40.9
BcaC05g28315 Brassica carinata HOM05D003131 ORTHO05D003761 1.6e-06 56.2 66 45.5
C05p43760 Brassica napus HOM05D003131 ORTHO05D003761 1.6e-06 56.2 66 45.5
BolC5t33092H Brassica oleracea HOM05D003131 ORTHO05D003761 1.6e-06 56.2 66 45.5
A05p28280 Brassica napus HOM05D003131 ORTHO05D003761 2.1e-06 55.8 67 41.8
BraA05t21710Z Brassica rapa HOM05D003131 ORTHO05D003761 2.1e-06 55.8 67 41.8
HanXRQChr13g0407701 Helianthus annuus HOM05D003131 ORTHO05D003761 2.1e-06 55.8 66 45.5
AT3G20560 Arabidopsis thaliana HOM05D003131 ORTHO05D003761 2.8e-06 55.5 67 41.8
AL3G34420 Arabidopsis lyrata HOM05D003131 ORTHO05D003761 3.6e-06 55.1 67 40.3
BcaB06g26121 Brassica carinata HOM05D003131 ORTHO05D003761 3.6e-06 55.1 66 43.9
BcaC08g43268 Brassica carinata HOM05D003131 ORTHO05D003761 4.7e-06 54.7 77 36.4
C06p06160 Brassica napus HOM05D003131 ORTHO05D003761 4.7e-06 54.7 77 36.4
BolC6t35727H Brassica oleracea HOM05D003131 ORTHO05D003761 4.7e-06 54.7 77 36.4
Carub.0003s2054 Capsella rubella HOM05D003131 ORTHO05D003761 4.7e-06 54.7 66 39.4
Gohir.D08G030500 Gossypium hirsutum HOM05D003131 ORTHO05D003761 4.7e-06 54.7 59 45.8
Aqoxy5G04182 Aquilegia oxysepala HOM05D003131 ORTHO05D003761 6.2e-06 54.3 65 44.6
BcaB04g19114 Brassica carinata HOM05D003131 ORTHO05D003761 8.1e-06 53.9 66 42.4
A06p02790 Brassica napus HOM05D003131 ORTHO05D003761 8.1e-06 53.9 68 39.7
BraA06t23486Z Brassica rapa HOM05D003131 ORTHO05D003761 8.1e-06 53.9 68 39.7


User provided reference genes

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