Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-260 902.5 440 100.0
SEGI_16019 Sequoiadendron giganteum HOM05D000004 ORTHO05D011076 5.0e-47 193.0 144 69.4
SEGI_39215 Sequoiadendron giganteum HOM05D000384 ORTHO05D007626 3.0e-44 183.7 133 67.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.4e-36 158.3 283 34.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.4e-36 158.3 283 34.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 9.7e-35 152.1 372 32.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 5.3e-33 146.4 368 32.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.9e-32 142.9 364 31.0
SEGI_24522 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.0e-31 142.1 104 63.5
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.3e-31 141.7 336 32.4
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.9e-30 137.9 303 30.7
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.5e-30 137.5 377 30.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.5e-30 137.5 327 28.7
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 9.4e-30 135.6 265 32.8
SEGI_28788 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.1e-29 134.4 106 57.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.7e-29 134.0 365 30.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.7e-29 134.0 275 33.5
SEGI_20351 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 2.7e-29 134.0 106 59.4
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 3.6e-29 133.7 273 32.6
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 6.1e-29 132.9 376 28.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.8e-28 131.3 344 29.4
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.0e-28 130.6 248 33.9
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.5e-27 128.3 280 30.7
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-27 128.3 374 28.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-27 128.3 364 28.6
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.0e-27 127.9 374 28.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.6e-27 127.5 255 31.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.6e-27 127.5 301 32.2
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.3e-27 127.1 260 31.5
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.3e-27 127.1 365 28.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.4e-27 126.7 365 28.8
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 5.7e-27 126.3 369 28.5
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.7e-27 126.3 261 31.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 7.4e-27 125.9 399 29.1
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.7e-27 125.6 397 28.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 9.7e-27 125.6 369 29.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.7e-26 124.8 314 30.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-26 124.8 402 28.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-26 124.8 402 28.4
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-26 124.8 402 28.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-26 124.8 402 28.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.2e-26 124.4 297 31.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.8e-26 124.0 374 27.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 6.3e-26 122.9 343 27.7
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.3e-26 122.9 365 28.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 8.2e-26 122.5 289 31.1
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.1e-25 122.1 362 29.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.1e-25 122.1 297 30.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.4e-25 121.7 260 29.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.8e-25 121.3 406 26.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.8e-25 121.3 370 28.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.8e-25 121.3 371 29.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.8e-25 121.3 281 28.1
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.4e-25 120.9 81 70.4
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.1e-25 120.6 292 32.9
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 4.1e-25 120.2 289 30.8
SEGI_37580 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 5.3e-25 119.8 159 38.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.0e-25 119.4 258 31.4
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.0e-25 119.4 245 32.2
SEGI_30553 Sequoiadendron giganteum HOM05D000121 ORTHO05D007423 2.0e-24 117.9 122 49.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-24 117.5 273 30.0
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-24 117.5 273 30.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.5e-24 117.1 252 30.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.5e-24 117.1 351 29.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.5e-24 116.7 351 28.5
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 5.9e-24 116.3 293 29.4
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-24 115.9 418 26.1
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 7.7e-24 115.9 289 30.1
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 7.7e-24 115.9 283 31.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.3e-23 115.2 247 30.0
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.7e-23 114.8 330 27.6
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.7e-23 114.8 258 30.6
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.9e-23 114.0 258 31.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.9e-23 114.0 368 30.2
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.9e-23 114.0 276 29.7
SEGI_18945 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.9e-23 114.0 93 57.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 5.0e-23 113.2 281 30.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 6.5e-23 112.8 369 24.1
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.5e-23 112.8 404 27.0
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-22 112.1 336 24.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.5e-22 111.7 260 30.4
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.5e-22 111.7 375 29.3
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.5e-22 111.7 342 28.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-22 111.7 407 25.3
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-22 111.7 353 28.6
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.5e-22 111.7 171 33.9
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.2e-22 110.5 271 28.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 3.2e-22 110.5 262 29.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.2e-22 110.5 318 26.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 7.2e-22 109.4 408 25.7
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.4e-22 109.0 285 30.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.6e-21 108.2 343 27.1
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.6e-21 108.2 334 29.0
SEGI_15361 Sequoiadendron giganteum HOM05D000458 ORTHO05D000002 1.6e-21 108.2 69 79.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.1e-21 107.8 310 27.4
SEGI_38960 Sequoiadendron giganteum HOM05D001282 ORTHO05D001236 2.7e-21 107.5 89 53.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.7e-21 107.5 280 31.1
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-21 107.1 238 31.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 4.7e-21 106.7 262 30.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.0e-20 105.5 399 26.6
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.4e-20 105.1 183 31.1
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.8e-20 104.8 178 32.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.3e-20 104.4 182 31.9
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.3e-20 104.4 352 25.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 5.2e-20 103.2 388 26.0
SEGI_31560 Sequoiadendron giganteum HOM05D134058 ORTHO05D001236 8.8e-20 102.4 99 47.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.3e-19 100.5 174 32.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 9.7e-19 99.0 176 28.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-18 98.6 192 30.2
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-18 98.6 182 30.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.3e-18 98.6 393 24.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-18 98.2 192 30.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.2e-18 97.8 287 28.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.7e-18 97.1 182 30.2
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.4e-17 95.1 192 28.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-17 95.1 98 50.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.4e-17 94.4 295 27.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.4e-17 94.4 340 25.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.1e-17 93.6 352 25.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.3e-17 93.2 350 26.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.3e-17 93.2 147 36.7
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.0e-17 92.8 245 26.1
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.7e-16 90.9 368 26.4
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 4.5e-16 90.1 87 46.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-15 87.4 155 32.3
SEGI_34648 Sequoiadendron giganteum HOM05D000004 ORTHO05D011076 1.9e-14 84.7 100 41.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.5e-14 83.2 157 32.5
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 5.5e-14 83.2 254 25.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 9.4e-14 82.4 276 27.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.6e-13 81.6 249 27.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.7e-13 80.1 89 47.2
PSO170G5972 Papaver somniferum HOM05D000004 ORTHO05D000002 4.0e-12 77.0 146 33.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.8e-12 76.3 117 36.8
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.8e-12 75.9 109 42.2
FvH4_1g14571 Fragaria vesca HOM05D000004 ORTHO05D000002 4.4e-11 73.6 159 28.9
QL09p044885 Quercus lobata HOM05D000004 ORTHO05D000002 1.3e-10 72.0 138 30.4
PSO675G1170 Papaver somniferum HOM05D000004 ORTHO05D000002 8.3e-10 69.3 178 28.7
QL01p053992 Quercus lobata HOM05D000004 ORTHO05D000002 1.8e-09 68.2 135 32.6
QL04p085052 Quercus lobata HOM05D000004 ORTHO05D000002 1.8e-09 68.2 135 32.6
QL08p043961 Quercus lobata HOM05D000004 ORTHO05D000002 2.4e-09 67.8 135 32.6
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.1e-09 67.4 418 23.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.0e-08 64.7 283 23.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.5e-08 63.5 300 25.0
PSO493G0015 Papaver somniferum HOM05D000004 ORTHO05D000002 4.5e-08 63.5 105 34.3
ECA246G3513 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.0e-07 62.4 177 25.4
PSO675G0571 Papaver somniferum HOM05D000004 ORTHO05D000002 2.2e-07 61.2 174 25.9
PSO017G5410 Papaver somniferum HOM05D000004 ORTHO05D000002 2.9e-07 60.8 171 26.9
Sopen01g020870 Solanum pennellii HOM05D000004 ORTHO05D000002 5.0e-07 60.1 133 27.1
PSO478G0249 Papaver somniferum HOM05D000004 ORTHO05D000002 6.5e-07 59.7 168 24.4
PSO675G7897 Papaver somniferum HOM05D000004 ORTHO05D000002 8.5e-07 59.3 124 26.6
PSO063G4010 Papaver somniferum HOM05D000004 ORTHO05D000002 1.5e-06 58.5 156 24.4
PSO675G6456 Papaver somniferum HOM05D000004 ORTHO05D000002 3.2e-06 57.4 198 22.7
SEGI_03023 Sequoiadendron giganteum HOM05D000063 ORTHO05D013782 4.2e-06 57.0 48 56.2
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.2e-06 57.0 39 61.5
Ca_05479_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 7.2e-06 56.2 127 26.8
ECA248G1045 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.2e-06 56.2 178 24.7


User provided reference genes

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