Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 6.0e-234 813.9 445 100.0
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 1.1e-20 105.5 343 27.7
SEGI_36132 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.2e-18 97.8 102 53.9
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 6.4e-18 96.3 349 27.2
SEGI_02055 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.4e-17 95.1 165 39.4
SEGI_26766 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.4e-17 93.2 102 52.0
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 2.7e-16 90.9 353 28.3
SEGI_06759 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.7e-16 90.9 102 48.0
SEGI_17547 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.7e-15 88.2 101 48.5
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 2.3e-15 87.8 377 27.6
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 8.6e-15 85.9 355 26.5
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 1.5e-14 85.1 359 25.1
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 1.9e-14 84.7 363 26.2
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 2.5e-14 84.3 102 46.1
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 3.3e-14 84.0 357 26.1
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 3.3e-14 84.0 319 27.0
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 3.3e-14 84.0 381 26.8
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.3e-14 83.6 397 25.9
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 4.3e-14 83.6 358 27.1
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 5.6e-14 83.2 312 28.2
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 9.5e-14 82.4 362 26.0
SEGI_35826 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-13 82.0 120 41.7
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 2.8e-13 80.9 335 27.8
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 2.8e-13 80.9 83 53.0
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 3.6e-13 80.5 415 25.3
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 3.6e-13 80.5 354 26.8
SEGI_02520 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.2e-13 79.7 101 46.5
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 6.2e-13 79.7 371 23.7
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 1.1e-12 79.0 357 26.1
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.4e-12 78.6 368 26.6
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.4e-12 78.6 101 42.6
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 2.3e-12 77.8 344 25.6
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 3.1e-12 77.4 359 23.4
SEGI_06975 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.0e-12 77.0 101 45.5
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 6.8e-12 76.3 101 45.5
SEGI_02352 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 8.9e-12 75.9 134 37.3
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 8.9e-12 75.9 362 24.0
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 1.2e-11 75.5 363 27.0
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 1.2e-11 75.5 350 26.0
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 1.5e-11 75.1 362 26.0
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 2.0e-11 74.7 362 25.4
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 2.0e-11 74.7 374 23.3
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 2.6e-11 74.3 350 27.1
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 2.6e-11 74.3 342 26.0
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.6e-11 74.3 138 37.7
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.6e-11 74.3 363 25.6
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 4.4e-11 73.6 350 24.6
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 4.4e-11 73.6 347 25.9
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 4.4e-11 73.6 351 26.2
SEGI_01977 Sequoiadendron giganteum HOM05D002039 ORTHO05D005834 5.8e-11 73.2 120 39.2
SEGI_37560 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.8e-11 73.2 76 53.9
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 7.6e-11 72.8 140 38.6
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 7.6e-11 72.8 350 24.3
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 9.9e-11 72.4 366 23.0
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 9.9e-11 72.4 368 23.9
SEGI_39341 Sequoiadendron giganteum HOM05D000112 ORTHO05D000014 9.9e-11 72.4 98 40.8
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.3e-10 72.0 354 23.4
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 1.7e-10 71.6 362 24.9
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.2e-10 71.2 357 24.9
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 2.9e-10 70.9 141 34.0
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 2.9e-10 70.9 330 24.5
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 2.9e-10 70.9 345 24.1
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.7e-10 70.5 335 25.1
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 6.4e-10 69.7 311 24.8
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 6.4e-10 69.7 397 22.7
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 6.4e-10 69.7 351 26.2
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 1.4e-09 68.6 136 35.3
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 1.9e-09 68.2 350 23.4
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 1.9e-09 68.2 345 27.8
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 3.2e-09 67.4 332 22.9
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 4.1e-09 67.0 187 32.1
SEGI_36816 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.1e-09 67.0 101 38.6
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 5.4e-09 66.6 143 34.3
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 7.1e-09 66.2 347 25.4
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 9.2e-09 65.9 138 37.0
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 9.2e-09 65.9 139 36.0
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 9.2e-09 65.9 136 36.0
SEGI_26340 Sequoiadendron giganteum HOM05D000484 ORTHO05D000346 9.2e-09 65.9 103 38.8
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.6e-08 65.1 353 24.6
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 1.6e-08 65.1 347 24.8
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 1.6e-08 65.1 354 24.3
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 1.6e-08 65.1 258 29.5
Hma1.2p1_0017F.1_g011150 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.6e-08 65.1 134 32.8
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 1.6e-08 65.1 136 34.6
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.1e-08 64.7 139 36.0
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 4.6e-08 63.5 347 27.1
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 6.0e-08 63.2 269 28.3
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 7.8e-08 62.8 341 24.6
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 1.3e-07 62.0 378 24.6
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 2.3e-07 61.2 140 34.3
Hma1.2p1_1937F.1_g308280 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 3.0e-07 60.8 101 36.6
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.9e-07 60.5 360 25.0
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 3.9e-07 60.5 391 23.5
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 5.1e-07 60.1 210 28.6
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 5.1e-07 60.1 325 23.7
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 6.6e-07 59.7 370 24.1
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 6.6e-07 59.7 371 23.2
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 6.6e-07 59.7 336 24.7
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 6.6e-07 59.7 341 27.0
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 6.6e-07 59.7 369 24.1
Hma1.2p1_0619F.1_g190370 Hydrangea macrophylla HOM05D000023 ORTHO05D002258 8.6e-07 59.3 134 28.4
Actinidia06841 Actinidia chinensis HOM05D000023 ORTHO05D000014 1.1e-06 58.9 102 36.3
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.1e-06 58.9 144 30.6
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.1e-06 58.9 157 33.1
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 2.5e-06 57.8 141 31.2
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 2.5e-06 57.8 341 31.4
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 2.5e-06 57.8 350 23.1
SEGI_02209 Sequoiadendron giganteum HOM05D002022 ORTHO05D000014 3.3e-06 57.4 81 45.7
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 4.3e-06 57.0 326 23.9
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 4.3e-06 57.0 339 26.3
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 4.3e-06 57.0 160 29.4
SHI21388 Sapria himalayana HOM05D000023 ORTHO05D000014 5.6e-06 56.6 97 35.1
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 7.3e-06 56.2 339 26.3
Ca_19810_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 7.3e-06 56.2 102 34.3
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 7.3e-06 56.2 179 28.5
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 7.3e-06 56.2 320 25.9
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 9.6e-06 55.8 346 22.5
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.6e-06 55.8 245 24.1


User provided reference genes

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