Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.0e-63 244.6 123 100.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.5e-46 189.5 96 99.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.2e-20 102.1 94 61.7
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-19 100.1 87 63.2
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.1e-19 99.4 88 61.4
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.1e-19 99.4 87 62.1
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 2.1e-19 99.4 87 62.1
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.6e-19 98.2 67 73.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 7.9e-19 97.4 82 62.2
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.9e-19 97.4 98 61.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.0e-18 97.1 87 60.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.4e-18 96.7 77 62.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-18 96.7 91 59.3
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.8e-18 96.3 86 62.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.0e-18 95.5 90 63.3
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.9e-18 95.1 97 56.7
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 5.1e-18 94.7 99 53.5
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.1e-18 94.7 101 55.4
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.1e-18 94.7 55 80.0
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 6.7e-18 94.4 87 60.9
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 6.7e-18 94.4 82 59.8
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 8.8e-18 94.0 56 76.8
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 8.8e-18 94.0 111 54.1
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 8.8e-18 94.0 83 61.4
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.8e-18 94.0 81 63.0
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.8e-18 94.0 81 63.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.1e-17 93.6 69 68.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-17 93.6 100 52.0
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.1e-17 93.6 100 52.0
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.5e-17 93.2 98 53.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.5e-17 93.2 98 53.1
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 64.4
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 64.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 64.4
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.9e-17 92.8 96 55.2
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.9e-17 92.8 96 55.2
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.9e-17 92.8 103 53.4
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.5e-17 92.4 57 77.2
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-17 92.4 55 76.4
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.3e-17 92.0 98 52.0
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.3e-17 92.0 57 75.4
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 3.3e-17 92.0 55 78.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 4.3e-17 91.7 84 59.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 4.3e-17 91.7 97 54.6
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 4.3e-17 91.7 98 49.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 5.7e-17 91.3 95 56.8
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 7.4e-17 90.9 69 66.7
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 7.4e-17 90.9 92 56.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.4e-17 90.9 57 75.4
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 7.4e-17 90.9 87 60.9
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 9.7e-17 90.5 83 59.0
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 9.7e-17 90.5 93 57.0
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-16 90.1 70 62.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.3e-16 90.1 77 61.0
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-16 90.1 96 53.1
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-16 90.1 55 74.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.3e-16 90.1 57 71.9
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.7e-16 89.7 55 72.7
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.7e-16 89.7 57 75.4
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.2e-16 89.4 84 58.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 2.2e-16 89.4 86 57.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.2e-16 89.4 58 77.6
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.8e-16 89.0 102 50.0
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.8e-16 89.0 55 76.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.8e-16 89.0 85 57.6
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.7e-16 88.6 94 54.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.7e-16 88.6 73 61.6
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 3.7e-16 88.6 69 65.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 4.8e-16 88.2 57 71.9
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.8e-16 88.2 62 72.6
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 6.3e-16 87.8 70 61.4
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 6.3e-16 87.8 70 62.9
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.3e-16 87.8 56 75.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.3e-16 87.8 51 78.4
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 6.3e-16 87.8 86 55.8
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 6.3e-16 87.8 57 75.4
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.2e-16 87.4 67 67.2
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.2e-16 87.4 76 61.8
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 8.2e-16 87.4 62 69.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.1e-15 87.0 85 55.3
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.1e-15 87.0 84 57.1
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-15 87.0 99 51.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-15 87.0 99 51.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.1e-15 87.0 99 51.5
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.1e-15 87.0 101 51.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.4e-15 86.7 96 53.1
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.4e-15 86.7 55 76.4
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.8e-15 86.3 57 73.7
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.8e-15 86.3 83 55.4
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 2.4e-15 85.9 57 73.7
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.4e-15 85.9 94 50.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.4e-15 85.9 85 60.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.1e-15 85.5 95 50.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.1e-15 85.5 97 54.6
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 3.1e-15 85.5 93 52.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.1e-15 85.1 93 51.6
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.1e-15 85.1 103 52.4
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 5.3e-15 84.7 87 57.5
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.3e-15 84.7 85 56.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 6.9e-15 84.3 97 49.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 6.9e-15 84.3 69 62.3
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 9.1e-15 84.0 55 65.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.2e-14 83.6 82 54.9
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-14 83.6 88 54.5
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-14 83.6 89 51.7
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-14 83.6 88 54.5
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.2e-14 83.6 88 54.5
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.2e-14 83.6 89 51.7
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.2e-14 83.6 52 78.8
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.5e-14 83.2 97 47.4
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.5e-14 83.2 84 58.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.6e-14 82.4 96 45.8
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 3.4e-14 82.0 57 64.9
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.5e-14 81.6 92 52.2
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 5.9e-14 81.3 95 51.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.0e-13 80.5 93 48.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.2e-13 79.3 43 86.0
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.2e-13 79.3 43 86.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.8e-13 78.6 84 54.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.0e-13 78.2 71 56.3
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.5e-13 77.4 47 76.6
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.1e-12 77.0 86 51.2
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-12 76.3 57 64.9
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.5e-12 75.9 43 79.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.2e-11 73.6 50 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.6e-11 73.2 52 63.5
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-11 72.4 98 42.9
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.6e-11 72.0 104 42.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.7e-11 71.6 95 45.3
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 7.9e-11 70.9 52 61.5
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.0e-10 70.5 48 66.7
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.0e-10 70.5 52 59.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.7e-08 63.2 87 48.3
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 2.2e-08 62.8 69 46.4


User provided reference genes

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