Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 9.1e-130 466.8 226 100.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.8e-14 82.4 68 57.4
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 8.3e-14 81.6 53 71.7
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.1e-13 81.3 51 68.6
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.8e-13 80.5 53 67.9
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.1e-13 79.3 51 72.5
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.1e-13 79.3 51 70.6
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.6e-12 77.4 51 68.6
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.7e-12 76.6 51 70.6
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-12 76.6 51 64.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.7e-12 76.6 51 66.7
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 3.5e-12 76.3 51 66.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 3.5e-12 76.3 48 70.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 3.5e-12 76.3 67 55.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.5e-12 76.3 53 64.2
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 4.5e-12 75.9 51 66.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 4.5e-12 75.9 51 66.7
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.9e-12 75.5 75 52.0
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 7.7e-12 75.1 53 64.2
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.0e-11 74.7 51 64.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.0e-11 74.7 59 55.9
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.3e-11 74.3 51 66.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.3e-11 74.3 53 62.3
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.3e-11 74.3 70 51.4
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.3e-11 74.3 51 62.7
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.3e-11 74.3 63 52.4
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.3e-11 74.3 53 60.4
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.7e-11 73.9 72 50.0
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 2.2e-11 73.6 47 68.1
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.2e-11 73.6 51 66.7
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 2.2e-11 73.6 53 64.2
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 2.2e-11 73.6 76 52.6
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.2e-11 73.6 51 64.7
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.9e-11 73.2 51 60.8
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 3.8e-11 72.8 52 67.3
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.0e-11 72.4 51 64.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.0e-11 72.4 51 64.7
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.0e-11 72.4 51 64.7
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.0e-11 72.4 51 64.7
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 8.5e-11 71.6 51 64.7
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 8.5e-11 71.6 51 68.6
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.9e-10 70.5 54 57.4
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 2.5e-10 70.1 51 62.7
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.5e-10 70.1 51 60.8
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.5e-10 70.1 53 64.2
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 2.5e-10 70.1 51 62.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.5e-10 70.1 51 56.9
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.5e-10 70.1 51 60.8
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 3.2e-10 69.7 51 62.7
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.2e-10 69.7 51 60.8
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 4.2e-10 69.3 51 62.7
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 4.2e-10 69.3 53 56.6
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 5.5e-10 68.9 51 60.8
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 7.2e-10 68.6 62 51.6
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 9.4e-10 68.2 51 62.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 9.4e-10 68.2 51 60.8
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 9.4e-10 68.2 51 62.7
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.2e-09 67.8 47 63.8
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.2e-09 67.8 51 60.8
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.6e-09 67.4 49 61.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.6e-09 67.4 47 61.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.6e-09 67.4 51 54.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.6e-09 67.4 51 54.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.6e-09 67.4 51 54.9
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.6e-09 67.4 56 55.4
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.1e-09 67.0 48 62.5
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 2.1e-09 67.0 50 62.0
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.1e-09 67.0 52 57.7
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.1e-09 67.0 51 62.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 2.1e-09 67.0 50 62.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 2.1e-09 67.0 50 62.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.1e-09 67.0 51 58.8
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.7e-09 66.6 50 62.0
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 2.7e-09 66.6 47 70.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 3.6e-09 66.2 50 60.0
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.6e-09 66.2 50 62.0
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 3.6e-09 66.2 54 57.4
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.6e-09 66.2 56 50.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.6e-09 66.2 51 52.9
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 4.7e-09 65.9 59 52.5
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 4.7e-09 65.9 48 62.5
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 4.7e-09 65.9 48 62.5
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 4.7e-09 65.9 50 58.0
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 6.1e-09 65.5 51 58.8
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 6.1e-09 65.5 51 58.8
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.1e-09 65.5 39 74.4
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 6.1e-09 65.5 48 66.7
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 8.0e-09 65.1 48 60.4
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 8.0e-09 65.1 50 60.0
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 8.0e-09 65.1 52 55.8
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-08 64.7 48 60.4
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.0e-08 64.7 84 46.4
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.4e-08 64.3 48 64.6
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.4e-08 64.3 62 51.6
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 1.4e-08 64.3 65 49.2
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.4e-08 64.3 52 53.8
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.8e-08 63.9 53 64.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.3e-08 63.5 48 58.3
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.3e-08 63.5 48 58.3
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 2.3e-08 63.5 48 58.3
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.3e-08 63.5 52 53.8
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.3e-08 63.5 73 45.2
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.0e-08 63.2 48 60.4
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 3.0e-08 63.2 50 60.0
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 4.0e-08 62.8 52 51.9
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.2e-08 62.4 48 56.2
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.8e-08 62.0 66 51.5
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 8.8e-08 61.6 47 59.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.2e-07 61.2 51 56.9
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.5e-07 60.8 51 56.9
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.5e-07 60.8 49 55.1
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.5e-07 60.8 58 51.7
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 2.0e-07 60.5 50 60.0
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.0e-07 60.5 73 45.2
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.0e-07 60.5 59 45.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 2.6e-07 60.1 62 46.8
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 4.4e-07 59.3 48 56.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 4.4e-07 59.3 74 43.2
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.7e-07 58.9 65 46.2
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 5.7e-07 58.9 51 56.9
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 7.5e-07 58.5 47 55.3
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 7.5e-07 58.5 55 58.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 9.8e-07 58.2 72 45.8
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-06 57.8 48 56.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.3e-06 57.8 54 51.9
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.3e-06 57.8 48 56.2
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 1.3e-06 57.8 34 73.5
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.3e-06 57.8 34 73.5
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 1.3e-06 57.8 34 73.5
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.3e-06 57.8 90 41.1
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 1.7e-06 57.4 47 55.3
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.7e-06 57.4 48 56.2
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.7e-06 57.4 48 56.2
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.7e-06 57.4 48 56.2
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.7e-06 57.4 57 52.6
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 2.2e-06 57.0 69 52.2
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 3.7e-06 56.2 48 50.0
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 3.7e-06 56.2 48 50.0
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 3.7e-06 56.2 48 50.0
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 3.7e-06 56.2 47 53.2
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 4.9e-06 55.8 36 63.9
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 4.9e-06 55.8 55 58.2
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 4.9e-06 55.8 63 52.4
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.3e-06 55.5 46 56.5


User provided reference genes

Program Settings