Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.4e-156 556.2 271 100.0
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 6.7e-87 324.7 234 67.5
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 4.4e-86 322.0 206 73.3
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 9.7e-86 320.9 207 73.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 9.7e-86 320.9 205 71.7
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 9.7e-86 320.9 210 72.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.8e-85 319.3 204 72.5
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.8e-85 319.3 207 72.5
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.8e-85 319.3 205 73.2
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.7e-85 318.9 213 70.4
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 3.7e-85 318.9 260 61.5
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 8.2e-85 317.8 210 70.0
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.8e-84 316.6 188 77.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.8e-84 316.6 212 69.3
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.8e-84 316.6 207 71.0
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 7.0e-84 314.7 206 71.4
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.1e-84 314.3 243 62.1
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.2e-83 313.9 206 69.9
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.0e-83 313.2 196 74.0
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.0e-83 313.2 196 74.5
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.6e-83 312.8 228 65.4
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 3.4e-83 312.4 221 66.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.4e-83 312.4 196 74.0
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.4e-83 312.4 218 67.4
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.5e-83 312.0 187 75.4
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 5.9e-83 311.6 207 70.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 7.7e-83 311.2 223 66.4
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 7.7e-83 311.2 236 64.0
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.0e-82 310.8 207 71.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.3e-82 310.5 249 58.6
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.2e-82 309.7 207 69.1
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-82 309.7 214 68.2
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.9e-82 309.3 188 76.1
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.9e-82 309.3 205 71.2
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.8e-82 308.9 186 75.3
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 3.8e-82 308.9 205 68.8
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.0e-82 308.5 201 72.6
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.1e-81 307.4 201 70.6
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.1e-81 307.4 185 75.7
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.9e-81 306.6 214 67.8
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-81 306.6 242 61.2
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.2e-81 305.8 201 70.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 4.2e-81 305.4 272 60.3
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 5.5e-81 305.1 196 74.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.5e-81 305.1 204 69.6
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 9.4e-81 304.3 206 68.0
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 9.4e-81 304.3 188 73.4
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.2e-80 303.9 190 74.7
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-80 303.9 204 70.6
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.6e-80 303.5 220 65.0
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.1e-80 303.1 188 73.4
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.7e-80 302.8 190 74.2
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.7e-80 302.8 207 69.6
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.7e-80 302.8 230 66.1
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.7e-80 302.8 203 70.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 2.7e-80 302.8 248 61.3
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 4.7e-80 302.0 189 73.5
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 6.1e-80 301.6 184 76.6
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 6.1e-80 301.6 188 73.4
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 6.1e-80 301.6 187 74.3
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 6.1e-80 301.6 204 69.6
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.0e-79 300.8 214 67.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.0e-79 300.8 206 67.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.8e-79 300.1 205 67.8
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.3e-79 299.7 187 73.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 3.9e-79 298.9 208 67.3
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 6.7e-79 298.1 275 55.3
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 2.0e-78 296.6 187 73.3
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.0e-78 296.6 187 73.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.0e-78 296.6 221 63.8
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.6e-78 296.2 200 68.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 3.3e-78 295.8 252 59.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 3.3e-78 295.8 187 70.6
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 3.3e-78 295.8 202 69.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.4e-78 294.7 187 71.7
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.7e-78 294.3 206 68.0
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-77 293.9 214 63.1
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.7e-77 293.5 204 67.2
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.2e-77 293.1 187 71.7
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.2e-77 293.1 281 54.1
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 2.2e-77 293.1 187 70.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.8e-77 292.7 204 68.1
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.8e-77 292.7 181 72.4
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 2.8e-77 292.7 185 70.8
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 3.7e-77 292.4 271 54.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.7e-77 292.4 230 60.9
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.7e-77 292.4 194 70.1
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 6.3e-77 291.6 187 70.1
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 6.3e-77 291.6 207 67.1
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.4e-76 290.4 181 71.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.4e-76 290.4 181 71.3
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.4e-76 290.4 181 71.3
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.1e-76 288.9 187 70.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 4.1e-76 288.9 181 70.7
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 7.0e-76 288.1 181 70.2
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 7.0e-76 288.1 181 70.7
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.2e-75 287.3 207 65.7
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.2e-74 283.1 204 65.7
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-73 279.6 187 70.6
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.2e-73 279.3 192 68.2
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-72 277.3 187 69.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.7e-72 276.2 160 78.8
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 8.0e-72 274.6 210 65.2
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 6.7e-71 271.6 208 64.9
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.3e-69 267.3 207 62.8
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.7e-69 266.9 192 67.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.4e-68 263.8 201 63.7
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 2.4e-68 263.1 167 70.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 4.1e-68 262.3 249 55.4
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 4.1e-68 262.3 171 71.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 7.0e-68 261.5 187 65.8
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 2.2e-66 256.5 188 63.8
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.2e-66 256.5 159 71.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-65 254.2 187 65.8
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.7e-64 248.8 182 64.3
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.5e-62 243.8 162 71.0
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 4.4e-62 242.3 182 58.2
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.0e-58 231.1 204 58.8
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.3e-58 230.7 211 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.4e-55 220.7 190 53.2
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.0e-55 219.5 141 71.6
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.7e-54 215.3 203 54.2
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 5.6e-49 198.7 139 64.7
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 4.4e-46 189.1 130 64.6
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.7e-43 179.9 152 61.2
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-38 164.5 102 72.5
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.5e-38 164.1 101 73.3
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.7e-37 159.5 108 67.6
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 3.1e-31 139.8 81 79.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 9.9e-30 134.8 90 71.1
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.3e-29 131.7 188 41.5
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-27 127.9 100 63.0
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.0e-26 123.2 100 60.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.2e-24 117.9 160 39.4
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 4.7e-24 115.9 220 35.0
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 6.2e-24 115.5 220 35.0
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 6.2e-24 115.5 220 35.0
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.4e-23 114.4 220 34.5
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.8e-23 114.0 220 34.5
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 4.0e-23 112.8 200 36.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 8.9e-23 111.7 208 35.1
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 1.5e-22 110.9 203 35.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 2.6e-22 110.2 186 35.5
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.4e-22 109.4 195 34.4
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 4.4e-22 109.4 230 33.0
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 5.8e-22 109.0 186 34.9
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 9.9e-22 108.2 195 34.4
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 9.9e-22 108.2 209 35.4
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.7e-21 107.5 201 35.3
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 2.2e-21 107.1 207 32.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.9e-21 106.7 198 31.8
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 3.8e-21 106.3 209 34.0
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 3.8e-21 106.3 186 34.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 3.2e-20 103.2 208 32.7
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 4.2e-20 102.8 201 33.8
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 5.4e-20 102.4 196 32.7
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 9.2e-20 101.7 184 33.7
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.2e-19 101.3 185 34.1
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 4.6e-19 99.4 187 34.8
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 4.6e-19 99.4 151 43.7
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 6.0e-19 99.0 199 32.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.0e-18 98.2 182 35.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 3.9e-18 96.3 131 42.0
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 2.1e-16 90.5 127 37.0
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.4e-15 87.8 217 29.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 9.0e-15 85.1 152 34.2
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.6e-14 83.6 69 59.4
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 7.6e-14 82.0 54 75.9
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 9.9e-14 81.6 53 71.7
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 2.2e-13 80.5 131 35.1
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 6.4e-13 79.0 140 33.6
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.2e-11 74.7 42 73.8
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.0e-10 70.1 140 36.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 6.6e-10 68.9 119 37.8
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-09 68.2 57 63.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 7.3e-09 65.5 112 35.7
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 3.6e-08 63.2 133 33.8
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 9.0e-07 58.5 37 70.3


User provided reference genes

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