Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.1e-141 505.8 273 100.0
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 4.9e-21 105.9 114 51.8
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 6.0e-19 99.0 113 45.1
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.3e-18 97.8 192 35.4
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 3.9e-18 96.3 112 46.4
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 5.1e-18 95.9 133 42.1
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.6e-16 90.9 134 40.3
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.6e-16 90.9 113 41.6
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 3.7e-16 89.7 122 43.4
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 6.2e-16 89.0 119 39.5
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.1e-15 88.2 113 41.6
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 1.1e-15 88.2 135 40.0
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.4e-15 87.8 114 43.0
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.4e-15 87.8 114 43.0
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.8e-15 87.4 116 40.5
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.8e-15 87.4 139 36.0
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.1e-15 86.7 114 43.0
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 3.1e-15 86.7 113 41.6
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.1e-15 86.7 74 52.7
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 4.1e-15 86.3 116 39.7
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.1e-15 86.3 112 41.1
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 5.3e-15 85.9 114 41.2
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 6.9e-15 85.5 113 41.6
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 6.9e-15 85.5 113 40.7
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 6.9e-15 85.5 113 40.7
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 6.9e-15 85.5 113 40.7
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 9.0e-15 85.1 123 40.7
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 9.0e-15 85.1 112 41.1
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.2e-14 84.7 113 40.7
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.2e-14 84.7 113 38.1
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 1.2e-14 84.7 116 37.9
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.5e-14 84.3 192 33.3
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.5e-14 84.3 113 41.6
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 2.0e-14 84.0 112 40.2
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 2.0e-14 84.0 113 42.5
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 2.6e-14 83.6 116 40.5
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.6e-14 83.6 113 40.7
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.6e-14 83.6 113 40.7
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.4e-14 83.2 135 40.7
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 4.5e-14 82.8 113 40.7
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 4.5e-14 82.8 118 38.1
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 4.5e-14 82.8 122 41.0
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 4.5e-14 82.8 119 39.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 4.5e-14 82.8 113 40.7
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 4.5e-14 82.8 116 37.1
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 5.8e-14 82.4 116 44.8
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 7.6e-14 82.0 113 42.5
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.0e-13 81.6 113 42.5
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.0e-13 81.6 119 39.5
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.3e-13 81.3 138 35.5
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.7e-13 80.9 116 37.1
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 2.2e-13 80.5 114 39.5
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.2e-13 80.5 121 38.8
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.9e-13 80.1 121 38.8
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.9e-13 80.1 134 35.1
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 2.9e-13 80.1 113 37.2
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 2.9e-13 80.1 134 35.8
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 2.9e-13 80.1 112 37.5
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 3.8e-13 79.7 138 34.8
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 3.8e-13 79.7 116 36.2
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.8e-13 79.7 116 39.7
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 5.0e-13 79.3 214 31.8
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 5.0e-13 79.3 113 38.1
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 6.5e-13 79.0 113 37.2
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 6.5e-13 79.0 118 38.1
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 6.5e-13 79.0 113 39.8
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.9e-12 77.4 113 37.2
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 2.5e-12 77.0 112 42.0
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 3.2e-12 76.6 113 36.3
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 3.2e-12 76.6 146 32.2
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 4.2e-12 76.3 113 36.3
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 4.2e-12 76.3 117 35.9
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 7.1e-12 75.5 113 39.8
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 7.1e-12 75.5 113 41.6
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 7.1e-12 75.5 115 35.7
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 9.3e-12 75.1 115 36.5
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.6e-11 74.3 134 35.1
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.7e-11 73.6 116 37.1
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.6e-11 72.8 136 33.8
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 4.6e-11 72.8 112 38.4
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 6.1e-11 72.4 116 37.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 6.1e-11 72.4 116 36.2
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 7.9e-11 72.0 116 35.3
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.0e-10 71.6 116 34.5
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 1.8e-10 70.9 136 32.4
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 1.8e-10 70.9 114 35.1
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 2.3e-10 70.5 134 32.1
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 3.0e-10 70.1 80 42.5
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 3.9e-10 69.7 134 32.1
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 3.9e-10 69.7 107 34.6
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 6.7e-10 68.9 116 34.5
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 8.7e-10 68.6 112 35.7
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 1.5e-09 67.8 192 27.6
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.9e-09 67.4 115 34.8
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 2.5e-09 67.0 116 34.5
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 2.5e-09 67.0 116 34.5
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 4.3e-09 66.2 116 34.5
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 4.3e-09 66.2 116 34.5
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 4.3e-09 66.2 134 30.6
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 7.4e-09 65.5 116 33.6
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 3.7e-08 63.2 131 32.8
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 3.4e-06 56.6 74 43.2
SEGI_20200 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 7.7e-06 55.5 52 65.4
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.0e-05 55.1 108 32.4


User provided reference genes

Program Settings