Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.9e-42 173.7 83 100.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 6.1e-23 110.5 62 80.6
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 6.1e-23 110.5 63 79.4
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 8.0e-23 110.2 62 80.6
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.0e-22 109.8 60 81.7
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.0e-22 109.8 62 80.6
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.4e-22 109.4 60 81.7
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.4e-22 109.4 60 78.3
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.4e-22 109.4 60 81.7
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 3.0e-22 108.2 60 80.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 4.0e-22 107.8 62 82.3
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 5.2e-22 107.5 60 75.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 6.7e-22 107.1 62 77.4
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 6.7e-22 107.1 60 78.3
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 8.8e-22 106.7 60 81.7
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 8.8e-22 106.7 66 71.2
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.8e-22 106.7 60 80.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 8.8e-22 106.7 60 75.0
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.5e-21 105.9 60 75.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.5e-21 105.9 60 80.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 2.0e-21 105.5 62 75.8
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.6e-21 105.1 58 81.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 2.6e-21 105.1 62 77.4
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.6e-21 105.1 60 75.0
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.6e-21 105.1 62 75.8
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.6e-21 105.1 62 77.4
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 3.3e-21 104.8 60 73.3
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.3e-21 104.8 66 71.2
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 3.3e-21 104.8 66 71.2
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.3e-21 104.8 66 71.2
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 4.4e-21 104.4 59 81.4
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 4.4e-21 104.4 60 78.3
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 4.4e-21 104.4 60 78.3
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 5.7e-21 104.0 66 74.2
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.7e-21 104.0 66 74.2
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.7e-21 104.0 66 74.2
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 5.7e-21 104.0 60 76.7
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 5.7e-21 104.0 62 75.8
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 5.7e-21 104.0 60 76.7
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 5.7e-21 104.0 60 78.3
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 7.5e-21 103.6 60 78.3
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 7.5e-21 103.6 66 71.2
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 7.5e-21 103.6 61 73.8
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 9.7e-21 103.2 62 75.8
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 1.3e-20 102.8 60 76.7
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.3e-20 102.8 62 77.4
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.3e-20 102.8 60 76.7
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.7e-20 102.4 60 76.7
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.7e-20 102.4 60 78.3
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 1.7e-20 102.4 62 75.8
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.7e-20 102.4 66 72.7
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 2.2e-20 102.1 60 76.7
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.2e-20 102.1 60 75.0
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 2.8e-20 101.7 60 78.3
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.8e-20 101.7 60 76.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.8e-20 101.7 62 74.2
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.8e-20 101.7 60 75.0
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.7e-20 101.3 60 78.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.7e-20 101.3 60 78.3
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 3.7e-20 101.3 60 78.3
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.7e-20 101.3 63 76.2
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.7e-20 101.3 60 76.7
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.8e-20 100.9 66 72.7
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 6.3e-20 100.5 60 73.3
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 6.3e-20 100.5 60 73.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 6.3e-20 100.5 60 76.7
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 6.3e-20 100.5 60 75.0
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 6.3e-20 100.5 60 76.7
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 6.3e-20 100.5 68 69.1
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.1e-19 99.8 60 75.0
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.1e-19 99.8 60 73.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.1e-19 99.8 66 69.7
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 1.4e-19 99.4 60 75.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.4e-19 99.4 59 78.0
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.4e-19 99.4 66 69.7
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.4e-19 99.4 66 69.7
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.4e-19 99.4 60 71.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.8e-19 99.0 68 70.6
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.8e-19 99.0 60 75.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.8e-19 99.0 60 76.7
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.4e-19 98.6 60 73.3
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 2.4e-19 98.6 60 75.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.1e-19 98.2 60 73.3
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.1e-19 98.2 60 73.3
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.1e-19 98.2 60 73.3
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 3.1e-19 98.2 62 74.2
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.1e-19 98.2 66 69.7
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.1e-19 98.2 66 69.7
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 3.1e-19 98.2 60 71.7
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 4.1e-19 97.8 60 71.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 5.3e-19 97.4 68 67.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 5.3e-19 97.4 66 68.2
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 5.3e-19 97.4 67 71.6
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 7.0e-19 97.1 68 67.6
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 9.1e-19 96.7 60 70.0
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-18 96.3 59 72.9
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-18 96.3 59 72.9
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.6e-18 95.9 60 71.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.6e-18 95.9 59 72.9
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.6e-18 95.9 60 71.7
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 3.5e-18 94.7 68 66.2
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 3.5e-18 94.7 68 66.2
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 5.9e-18 94.0 62 67.7
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 5.9e-18 94.0 60 71.7
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 5.9e-18 94.0 59 69.5
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 5.9e-18 94.0 60 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 7.7e-18 93.6 67 68.7
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.0e-17 93.2 59 71.2
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.2e-17 92.0 69 62.3
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 2.2e-17 92.0 54 77.8
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.9e-17 91.7 60 71.7
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 8.5e-17 90.1 66 65.2
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 8.5e-17 90.1 66 65.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 1.1e-16 89.7 62 66.1
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.5e-16 89.4 65 61.5
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.9e-16 89.0 58 70.7
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 3.2e-16 88.2 62 66.1
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 9.4e-16 86.7 66 63.6
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.3e-14 82.0 52 73.1
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 5.2e-14 80.9 65 63.1
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 2.6e-13 78.6 44 79.5
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 2.6e-13 78.6 44 79.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 5.7e-13 77.4 44 77.3
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 2.2e-09 65.5 54 59.3
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 6.5e-09 63.9 44 70.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.0e-06 55.1 25 88.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 5.2e-06 54.3 37 67.6


User provided reference genes

Program Settings