Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14418 Sequoiadendron giganteum HOM05D001503 ORTHO05D026140 1.2e-100 369.8 180 100.0
SEGI_21839 Sequoiadendron giganteum HOM05D000027 ORTHO05D026140 2.7e-31 139.4 84 82.1
SEGI_33038 Sequoiadendron giganteum HOM05D001503 ORTHO05D026140 2.3e-30 136.3 85 83.5
SEGI_00860 Sequoiadendron giganteum HOM05D001503 ORTHO05D026140 9.5e-29 131.0 83 78.3
SEGI_05331 Sequoiadendron giganteum HOM05D001503 ORTHO05D004525 9.5e-13 77.8 50 78.0
Mapoly0047s0028 Marchantia polymorpha HOM05D001503 ORTHO05D004525 8.0e-12 74.7 53 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3096 Anthoceros agrestis HOM05D001503 ORTHO05D004525 3.1e-11 72.8 50 70.0
SEGI_32505 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 4.0e-11 72.4 83 54.2
SMO236G0052 Selaginella moellendorffii HOM05D001503 ORTHO05D004525 1.5e-10 70.5 50 70.0
Pp3c17_14660 Physcomitrium patens HOM05D001503 ORTHO05D004525 2.6e-10 69.7 52 67.3
ECA233G4399 Erigeron canadensis HOM05D001503 ORTHO05D004525 3.4e-10 69.3 50 62.0
ECA233G2463 Erigeron canadensis HOM05D001503 ORTHO05D004525 4.4e-10 68.9 50 62.0
Nn5g27155 Nelumbo nucifera HOM05D001503 ORTHO05D004525 4.4e-10 68.9 50 64.0
PRCOL_00006115 Prasinoderma coloniale HOM05D001503 ORTHO05D004525 1.7e-09 67.0 50 64.0
ATR0585G044 Amborella trichopoda HOM05D001503 ORTHO05D004525 2.2e-09 66.6 50 60.0
ATR0749G054 Amborella trichopoda HOM05D001503 ORTHO05D004525 2.2e-09 66.6 50 60.0
CBR_g50308 Chara braunii HOM05D001503 ORTHO05D004525 2.2e-09 66.6 50 60.0
Lsat_1_v5_gn_1_40281 Lactuca sativa HOM05D001503 ORTHO05D004525 2.9e-09 66.2 50 60.0
Lj6A697T24 Lonicera japonica HOM05D001503 ORTHO05D004525 2.9e-09 66.2 50 58.0
HanXRQChr13g0389921 Helianthus annuus HOM05D001503 ORTHO05D004525 4.9e-09 65.5 50 56.0
TAR365G0248 Trochodendron aralioides HOM05D001503 ORTHO05D004525 4.9e-09 65.5 50 60.0
EL10Ac3g06287 Beta vulgaris HOM05D001503 ORTHO05D004525 6.4e-09 65.1 50 62.0
Haze_26501 Corylus avellana HOM05D001503 ORTHO05D004525 6.4e-09 65.1 50 56.0
HanXRQChr09g0251531 Helianthus annuus HOM05D001503 ORTHO05D004525 6.4e-09 65.1 50 56.0
Potri.008G100800 Populus trichocarpa HOM05D001503 ORTHO05D004525 6.4e-09 65.1 50 58.0
CDE05G0849 Ceratophyllum demersum HOM05D001503 ORTHO05D004525 8.3e-09 64.7 43 65.1
Duzib151G0855 Durio zibethinus HOM05D001503 ORTHO05D004525 8.3e-09 64.7 50 58.0
PSO210G4474 Papaver somniferum HOM05D001503 ORTHO05D004525 8.3e-09 64.7 50 60.0
THA.LOC104820322 Tarenaya hassleriana HOM05D001503 ORTHO05D004525 8.3e-09 64.7 50 62.0
Cre18.g749847 Chlamydomonas reinhardtii HOM05D001503 ORTHO05D004525 1.1e-08 64.3 74 48.6
Ciclev10004793m.g Citrus clementina HOM05D001503 ORTHO05D004525 1.1e-08 64.3 50 58.0
DCAR_002529 Daucus carota HOM05D001503 ORTHO05D004525 1.1e-08 64.3 50 58.0
Eucgr.H04086 Eucalyptus grandis HOM05D001503 ORTHO05D004525 1.1e-08 64.3 50 58.0
Hma1.2p1_1206F.1_g267020 Hydrangea macrophylla HOM05D001503 ORTHO05D004525 1.1e-08 64.3 50 58.0
PSO761G0396 Papaver somniferum HOM05D001503 ORTHO05D004525 1.1e-08 64.3 50 60.0
DCAR_026965 Daucus carota HOM05D001503 ORTHO05D004525 1.4e-08 63.9 50 56.0
DCAR_026968 Daucus carota HOM05D001503 ORTHO05D004525 1.4e-08 63.9 50 56.0
MBI18_g36462_MAGBIO Magnolia biondii HOM05D001503 ORTHO05D004525 1.4e-08 63.9 50 58.0
MSTRG.21750 Avicennia marina HOM05D001503 ORTHO05D004525 1.9e-08 63.5 48 62.5
AUR62002588 Chenopodium quinoa HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 60.0
ClCG05G006730 Citrullus lanatus HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 62.0
MELO3C006734.2 Cucumis melo HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 62.0
CsaV3_3G015360 Cucumis sativus L. HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 62.0
Lsat_1_v5_gn_6_69280 Lactuca sativa HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 58.0
HPP92_015251 Vanilla planifolia HOM05D001503 ORTHO05D004525 1.9e-08 63.5 50 58.0
CBR_g32221 Chara braunii HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 60.0
Gohir.A02G056500 Gossypium hirsutum HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 56.0
Gohir.D02G061700 Gossypium hirsutum HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 56.0
Gorai.005G069400 Gossypium raimondii HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 56.0
HanXRQChr11g0353961 Helianthus annuus HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 54.0
Oeu052153.1 Olea europaea HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 58.0
Sabra08G0076200 Salix brachista HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 58.0
Hund12239 Selenicereus undatus HOM05D001503 ORTHO05D004525 2.4e-08 63.2 50 60.0
Lalb_Chr07g0181861 Lupinus albus HOM05D001503 ORTHO05D004525 3.2e-08 62.8 50 56.0
MBI19_g32705_MAGBIO Magnolia biondii HOM05D001503 ORTHO05D004525 3.2e-08 62.8 50 60.0
Manes.03G209100 Manihot esculenta HOM05D001503 ORTHO05D004525 3.2e-08 62.8 50 56.0
Rhsim04G0244400 Rhododendron simsii HOM05D001503 ORTHO05D004525 3.2e-08 62.8 50 56.0
Sed0001944 Sechium edule HOM05D001503 ORTHO05D004525 3.2e-08 62.8 50 60.0
Actinidia02514 Actinidia chinensis HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Dinv29547 Davidia involucrata HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Migut.N00020 Erythranthe guttata HOM05D001503 ORTHO05D004525 4.1e-08 62.4 52 55.8
Glyma.07G232900 Glycine max HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Glyma.17G037900 Glycine max HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Lalb_Chr13g0298771 Lupinus albus HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Phvul.003G118800 Phaseolus vulgaris HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
QL06p013389 Quercus lobata HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
VMungo1215G0600 Vigna mungo HOM05D001503 ORTHO05D004525 4.1e-08 62.4 50 56.0
Ah.07g203830 Amaranthus hybridus HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 60.0
Ah.07g203870 Amaranthus hybridus HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 60.0
Cpa.g.sc146.65 Carica papaya HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 56.0
Lj4g0020015 Lotus japonicus HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 58.0
Rhsim02G0001500 Rhododendron simsii HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 58.0
HPP92_018273 Vanilla planifolia HOM05D001503 ORTHO05D004525 5.4e-08 62.0 50 56.0
Aqoxy2G02579 Aquilegia oxysepala HOM05D001503 ORTHO05D004525 7.0e-08 61.6 43 62.8
arahy.Tifrunner.gnm1.ann1.4YDI7F Arachis hypogaea HOM05D001503 ORTHO05D004525 7.0e-08 61.6 43 62.8
CSS0023274 Camellia sinensis var. sinensis HOM05D001503 ORTHO05D004525 7.0e-08 61.6 50 56.0
AUR62030011 Chenopodium quinoa HOM05D001503 ORTHO05D004525 7.0e-08 61.6 50 58.0
Dinv17913 Davidia involucrata HOM05D001503 ORTHO05D004525 7.0e-08 61.6 50 58.0
Migut.G00020 Erythranthe guttata HOM05D001503 ORTHO05D004525 7.0e-08 61.6 52 55.8
Migut.G00021 Erythranthe guttata HOM05D001503 ORTHO05D004525 7.0e-08 61.6 52 55.8
Os01g0328700 Oryza sativa ssp. japonica HOM05D001503 ORTHO05D004525 7.0e-08 61.6 50 58.0
Psat0s2692g0120 Pisum sativum HOM05D001503 ORTHO05D004525 7.0e-08 61.6 43 62.8
SHI00083 Sapria himalayana HOM05D001503 ORTHO05D004525 7.0e-08 61.6 48 62.5
Zm00001eb131070 Zea mays HOM05D001503 ORTHO05D004525 7.0e-08 61.6 51 56.9
Zm00001eb340590 Zea mays HOM05D001503 ORTHO05D004525 7.0e-08 61.6 51 56.9
BcaB06g25815 Brassica carinata HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
BcaC05g28809 Brassica carinata HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
A05p32500 Brassica napus HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
C05p49120 Brassica napus HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
BolC5t33655H Brassica oleracea HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
BraA05t22076Z Brassica rapa HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
Duzib212G0364 Durio zibethinus HOM05D001503 ORTHO05D004525 9.2e-08 61.2 50 56.0
Medtr4g123070 Medicago truncatula HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
Sp3g15460 Schrenkiella parvula HOM05D001503 ORTHO05D004525 9.2e-08 61.2 43 62.8
Thecc.04G308000 Theobroma cacao HOM05D001503 ORTHO05D004525 9.2e-08 61.2 48 56.2
vmacro07980 Vaccinium macrocarpon HOM05D001503 ORTHO05D004525 9.2e-08 61.2 48 58.3
arahy.Tifrunner.gnm1.ann1.UP4XN2 Arachis hypogaea HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
arahy.Tifrunner.gnm1.ann1.X7XT05 Arachis hypogaea HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
Ca_21400_v3 Cicer arietinum L. HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
Cc03_g00430 Coffea canephora HOM05D001503 ORTHO05D004525 1.2e-07 60.8 50 56.0
MD13G1147400 Malus domestica HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
MD16G1145800 Malus domestica HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
Hund12235 Selenicereus undatus HOM05D001503 ORTHO05D004525 1.2e-07 60.8 50 58.0
SGA_v2.0_scaffold123G33409 Striga asiatica HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
TPR.G12526 Trifolium pratense HOM05D001503 ORTHO05D004525 1.2e-07 60.8 43 62.8
TWI53G0927 Tripterygium wilfordii HOM05D001503 ORTHO05D004525 1.2e-07 60.8 50 56.0
vmacro15163 Vaccinium macrocarpon HOM05D001503 ORTHO05D004525 1.2e-07 60.8 50 54.0
Atru.chr4.3081 Acer truncatum HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 54.0
CAN.G305.51 Capsicum annuum HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 54.0
Cfa015697 Carpinus fangiana HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 58.0
MELO3C021247.2 Cucumis melo HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 56.0
CsaV3_6G000070 Cucumis sativus L. HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 56.0
Oeu014218.2 Olea europaea HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 56.0
Oeu033618.1 Olea europaea HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 56.0
PGR004G0786 Punica granatum HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 56.0
PGR031G3902 Punica granatum HOM05D001503 ORTHO05D004525 1.6e-07 60.5 48 56.2
Sp1g35010 Schrenkiella parvula HOM05D001503 ORTHO05D004525 1.6e-07 60.5 43 62.8
Sed0005001 Sechium edule HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 58.0
TAR633G0750 Trochodendron aralioides HOM05D001503 ORTHO05D004525 1.6e-07 60.5 50 58.0
Aa31LG8G4200 Aethionema arabicum HOM05D001503 ORTHO05D004525 2.0e-07 60.1 43 62.8
CANSAT78G0220 Cannabis sativa HOM05D001503 ORTHO05D004525 2.0e-07 60.1 50 56.0
FvH4_4g20900 Fragaria vesca HOM05D001503 ORTHO05D004525 2.0e-07 60.1 43 62.8
FAN07G2065 Fragaria x ananassa HOM05D001503 ORTHO05D004525 2.0e-07 60.1 43 62.8
FAN12G2723 Fragaria x ananassa HOM05D001503 ORTHO05D004525 2.0e-07 60.1 43 62.8
FAN17G2526 Fragaria x ananassa HOM05D001503 ORTHO05D004525 2.0e-07 60.1 43 62.8
Peaxi162Scf00126g01412 Petunia axillaris HOM05D001503 ORTHO05D004525 2.0e-07 60.1 50 54.0
SalBow5G3375 Salvia bowleyana HOM05D001503 ORTHO05D004525 2.0e-07 60.1 52 55.8
THA.LOC104818858 Tarenaya hassleriana HOM05D001503 ORTHO05D004525 2.0e-07 60.1 50 56.0
unitig_22.g6349 Utricularia gibba HOM05D001503 ORTHO05D004525 2.0e-07 60.1 52 55.8
unitig_8.g3101 Utricularia gibba HOM05D001503 ORTHO05D004525 2.0e-07 60.1 52 55.8
AL3G30280 Arabidopsis lyrata HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
AT3G17240 Arabidopsis thaliana HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
A06p04750 Brassica napus HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
BraA06t23678Z Brassica rapa HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
Carub.0003s1699 Capsella rubella HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
CARHR037670 Cardamine hirsuta HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
CARHR092510 Cardamine hirsuta HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
Nitab4.5_0000895g0100 Nicotiana tabacum HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
Nitab4.5_0005769g0030 Nicotiana tabacum HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
Peaxi162Scf00164g00520 Petunia axillaris HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
Sc06g0007560 Simmondsia chinensis HOM05D001503 ORTHO05D004525 2.7e-07 59.7 43 62.8
Solyc05g053300.3 Solanum lycopersicum HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
Sopen05g031810 Solanum pennellii HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
PGSC0003DMG400027156 Solanum tuberosum HOM05D001503 ORTHO05D004525 2.7e-07 59.7 50 54.0
Aa31LG10G5680 Aethionema arabicum HOM05D001503 ORTHO05D004525 3.5e-07 59.3 43 62.8
CANSAT78G1107 Cannabis sativa HOM05D001503 ORTHO05D004525 3.5e-07 59.3 50 54.0
Haze_00825 Corylus avellana HOM05D001503 ORTHO05D004525 3.5e-07 59.3 50 56.0
Nitab4.5_0000745g0180 Nicotiana tabacum HOM05D001503 ORTHO05D004525 3.5e-07 59.3 50 54.0
Nitab4.5_0008312g0030 Nicotiana tabacum HOM05D001503 ORTHO05D004525 3.5e-07 59.3 50 54.0
Prupe.1G110900 Prunus persica HOM05D001503 ORTHO05D004525 3.5e-07 59.3 43 62.8
TWI09G0619 Tripterygium wilfordii HOM05D001503 ORTHO05D004525 3.5e-07 59.3 50 54.0
BcaB07g33795 Brassica carinata HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
BcaC08g43003 Brassica carinata HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
C06p02440 Brassica napus HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
BolC6t35371H Brassica oleracea HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
CAN.G484.79 Capsicum annuum HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
CiPaw.01G133000 Carya illinoinensis HOM05D001503 ORTHO05D004525 4.6e-07 58.9 50 52.0
COL.COLO4_34550 Corchorus olitorius HOM05D001503 ORTHO05D004525 4.6e-07 58.9 50 54.0
Thhalv10011408m.g Eutrema salsugineum HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
Thhalv10020551m.g Eutrema salsugineum HOM05D001503 ORTHO05D004525 4.6e-07 58.9 43 62.8
CiPaw.02G071800 Carya illinoinensis HOM05D001503 ORTHO05D004525 6.0e-07 58.5 41 61.0
Solyc12g099100.2 Solanum lycopersicum HOM05D001503 ORTHO05D004525 6.0e-07 58.5 50 54.0
Sopen12g033810 Solanum pennellii HOM05D001503 ORTHO05D004525 6.0e-07 58.5 50 54.0
PGSC0003DMG400004608 Solanum tuberosum HOM05D001503 ORTHO05D004525 6.0e-07 58.5 50 54.0
AT1G48030 Arabidopsis thaliana HOM05D001503 ORTHO05D004525 7.8e-07 58.2 43 60.5
Carub.0001s3714 Capsella rubella HOM05D001503 ORTHO05D004525 7.8e-07 58.2 43 60.5
RcHm_v2.0_Chr4g0426331 Rosa chinensis HOM05D001503 ORTHO05D004525 1.0e-06 57.8 43 60.5
Potri.010G151400 Populus trichocarpa HOM05D001503 ORTHO05D004525 1.3e-06 57.4 50 54.0
Hund12238 Selenicereus undatus HOM05D001503 ORTHO05D004525 3.9e-06 55.8 50 52.0


User provided reference genes

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