Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14252 Sequoiadendron giganteum HOM05D000054 ORTHO05D006676 5.4e-83 310.8 145 100.0
SEGI_03156 Sequoiadendron giganteum HOM05D000054 ORTHO05D000171 1.5e-24 116.7 66 81.8
SEGI_11993 Sequoiadendron giganteum HOM05D000352 ORTHO05D006676 8.2e-23 110.9 56 94.6
SEGI_19016 Sequoiadendron giganteum HOM05D000290 ORTHO05D006676 3.1e-22 109.0 82 67.1
SEGI_34693 Sequoiadendron giganteum HOM05D007987 ORTHO05D010121 7.4e-16 87.8 56 75.0
ATR0763G084 Amborella trichopoda HOM05D000054 ORTHO05D000286 4.8e-15 85.1 63 58.7
Oeu001956.4 Olea europaea HOM05D000054 ORTHO05D000286 1.5e-13 80.1 85 43.5
TAR627G0538 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.5e-13 80.1 67 52.2
Oeu051993.2 Olea europaea HOM05D000054 ORTHO05D000286 2.6e-13 79.3 87 42.5
HanXRQChr11g0335111 Helianthus annuus HOM05D000054 ORTHO05D000286 3.4e-13 79.0 67 53.7
HanXRQChr11g0335751 Helianthus annuus HOM05D000054 ORTHO05D000286 3.4e-13 79.0 67 52.2
Migut.M01539 Erythranthe guttata HOM05D000054 ORTHO05D000286 1.3e-12 77.0 67 49.3
HanXRQChr11g0335741 Helianthus annuus HOM05D000054 ORTHO05D000286 2.2e-12 76.3 67 53.7
HanXRQChr11g0335791 Helianthus annuus HOM05D000054 ORTHO05D000171 2.2e-12 76.3 67 53.7
ECA236G0610 Erigeron canadensis HOM05D000054 ORTHO05D000286 2.9e-12 75.9 67 52.2
Rhsim06G0240700 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.9e-12 75.9 85 41.2
TPR.G24393 Trifolium pratense HOM05D000054 ORTHO05D000286 2.9e-12 75.9 67 50.7
HanXRQChr11g0335071 Helianthus annuus HOM05D000054 ORTHO05D000286 5.0e-12 75.1 67 50.7
HPP92_005931 Vanilla planifolia HOM05D000054 ORTHO05D000286 5.0e-12 75.1 85 42.4
Cc00_g21100 Coffea canephora HOM05D000054 ORTHO05D000171 1.1e-11 73.9 67 49.3
ECA236G4238 Erigeron canadensis HOM05D000054 ORTHO05D000171 1.1e-11 73.9 67 49.3
HanXRQChr11g0335131 Helianthus annuus HOM05D000054 ORTHO05D000286 1.1e-11 73.9 69 47.8
Rhsim06G0241100 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.1e-11 73.9 66 48.5
vmacro11708 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 1.4e-11 73.6 67 49.3
HPP92_005934 Vanilla planifolia HOM05D000054 ORTHO05D000171 4.2e-11 72.0 67 49.3
DCAR_019924 Daucus carota HOM05D000054 ORTHO05D000171 9.4e-11 70.9 67 44.8
Lj3g0007815 Lotus japonicus HOM05D000054 ORTHO05D000286 9.4e-11 70.9 67 46.3
Lj3g0026277 Lotus japonicus HOM05D000054 ORTHO05D000171 9.4e-11 70.9 67 46.3
Oeu051996.1 Olea europaea HOM05D000054 ORTHO05D000286 9.4e-11 70.9 88 39.8
Sc09g0007670 Simmondsia chinensis HOM05D000054 ORTHO05D000171 9.4e-11 70.9 67 46.3
Actinidia07369 Actinidia chinensis HOM05D000054 ORTHO05D000286 1.2e-10 70.5 67 43.3
Gohir.D10G048800 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.2e-10 70.5 87 42.5
HPP92_005932 Vanilla planifolia HOM05D000054 ORTHO05D000286 1.2e-10 70.5 67 47.8
Rhsim06G0143400 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.6e-10 70.1 67 47.8
Nn3g20886 Nelumbo nucifera HOM05D000054 ORTHO05D000286 2.1e-10 69.7 67 47.8
Zm00001eb430940 Zea mays HOM05D000054 ORTHO05D000171 2.1e-10 69.7 85 40.0
Gohir.A10G048100 Gossypium hirsutum HOM05D000054 ORTHO05D000286 2.7e-10 69.3 87 41.4
Os05g0263100 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 3.6e-10 68.9 86 36.0
Potri.007G067900 Populus trichocarpa HOM05D000054 ORTHO05D000286 3.6e-10 68.9 71 46.5
Rhsim06G0143000 Rhododendron simsii HOM05D000054 ORTHO05D000286 3.6e-10 68.9 67 46.3
Carub.0001s4474 Capsella rubella HOM05D000054 ORTHO05D000286 4.6e-10 68.6 67 46.3
HanXRQChr02g0037501 Helianthus annuus HOM05D000054 ORTHO05D000286 4.6e-10 68.6 63 52.4
QL04p037764 Quercus lobata HOM05D000054 ORTHO05D000286 4.6e-10 68.6 67 44.8
Rhsim06G0236300 Rhododendron simsii HOM05D000054 ORTHO05D000286 4.6e-10 68.6 67 44.8
SalBow8G2115 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.6e-10 68.6 70 45.7
Rhsim06G0240800 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.1e-10 68.2 85 38.8
RcHm_v2.0_Chr2g0114641 Rosa chinensis HOM05D000054 ORTHO05D000286 6.1e-10 68.2 85 38.8
Zm00001eb413670 Zea mays HOM05D000054 ORTHO05D000286 6.1e-10 68.2 67 43.3
Os08g0203400 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 1.0e-09 67.4 84 38.1
QL04p079123 Quercus lobata HOM05D000054 ORTHO05D000171 1.0e-09 67.4 67 44.8
GSVIVG01029727001 Vitis vinifera HOM05D000054 ORTHO05D000286 1.4e-09 67.0 90 38.9
Glyma.08G235800 Glycine max HOM05D000054 ORTHO05D000286 1.8e-09 66.6 63 50.8
Phvul.011G169300 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 1.8e-09 66.6 69 49.3
Os08g0203700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 2.3e-09 66.2 84 38.1
Carub.0001s4391 Capsella rubella HOM05D000054 ORTHO05D000286 3.0e-09 65.9 85 38.8
RcHm_v2.0_Chr2g0114871 Rosa chinensis HOM05D000054 ORTHO05D000171 3.0e-09 65.9 84 39.3
Glyma.08G235900 Glycine max HOM05D000054 ORTHO05D000286 3.9e-09 65.5 85 38.8
Prupe.4G105100 Prunus persica HOM05D000054 ORTHO05D000286 3.9e-09 65.5 86 44.2
AL1G64390 Arabidopsis lyrata HOM05D000054 ORTHO05D000286 5.1e-09 65.1 67 49.3
Eucgr.L01594 Eucalyptus grandis HOM05D000054 ORTHO05D000286 5.1e-09 65.1 67 46.3
QL04p077484 Quercus lobata HOM05D000054 ORTHO05D000286 6.7e-09 64.7 65 44.6
QL04p079309 Quercus lobata HOM05D000054 ORTHO05D000286 6.7e-09 64.7 67 43.3
RcHm_v2.0_Chr5g0073781 Rosa chinensis HOM05D000054 ORTHO05D000286 6.7e-09 64.7 68 47.1
A08p00060 Brassica napus HOM05D000054 ORTHO05D000286 8.8e-09 64.3 67 44.8
BraA08t32063Z Brassica rapa HOM05D000054 ORTHO05D000286 8.8e-09 64.3 67 44.8
QL04p077429 Quercus lobata HOM05D000054 ORTHO05D000171 8.8e-09 64.3 63 46.0
BcaB04g16915 Brassica carinata HOM05D000054 ORTHO05D000286 1.5e-08 63.5 67 44.8
A08p00090 Brassica napus HOM05D000054 ORTHO05D000286 1.5e-08 63.5 67 43.3
BraA08t32065Z Brassica rapa HOM05D000054 ORTHO05D000286 1.5e-08 63.5 67 43.3
RcHm_v2.0_Chr5g0073701 Rosa chinensis HOM05D000054 ORTHO05D000286 1.5e-08 63.5 68 47.1
SEGI_26124 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.5e-08 63.5 41 78.0
GSVIVG01013621001 Vitis vinifera HOM05D000054 ORTHO05D000286 1.5e-08 63.5 67 46.3
QL05p063388 Quercus lobata HOM05D000054 ORTHO05D000286 2.0e-08 63.2 88 43.2
ATR0763G021 Amborella trichopoda HOM05D000054 ORTHO05D000286 2.5e-08 62.8 49 57.1
C03p93410 Brassica napus HOM05D000054 ORTHO05D000286 2.5e-08 62.8 67 43.3
BolC3t21639H Brassica oleracea HOM05D000054 ORTHO05D000286 2.5e-08 62.8 67 43.3
Prupe.4G104700 Prunus persica HOM05D000054 ORTHO05D000286 2.5e-08 62.8 67 47.8
Zm00001eb070730 Zea mays HOM05D000054 ORTHO05D000286 2.5e-08 62.8 85 32.9
AT1G56140 Arabidopsis thaliana HOM05D000054 ORTHO05D000286 4.3e-08 62.0 67 46.3
BcaB07g30590 Brassica carinata HOM05D000054 ORTHO05D000286 4.3e-08 62.0 67 44.8
CsaV3_7G022790 Cucumis sativus L. HOM05D000054 ORTHO05D000286 4.3e-08 62.0 67 43.3
Nitab4.5_0002321g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000171 4.3e-08 62.0 67 40.3
RcHm_v2.0_Chr5g0025931 Rosa chinensis HOM05D000054 ORTHO05D000286 4.3e-08 62.0 56 50.0
AT1G56120 Arabidopsis thaliana HOM05D000054 ORTHO05D000286 5.7e-08 61.6 67 46.3
A07p36710 Brassica napus HOM05D000054 ORTHO05D000286 5.7e-08 61.6 69 42.0
BraA07t31239Z Brassica rapa HOM05D000054 ORTHO05D000286 5.7e-08 61.6 69 42.0
Prupe.7G040400 Prunus persica HOM05D000054 ORTHO05D000286 5.7e-08 61.6 71 43.7
Os04g0616700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 7.4e-08 61.2 67 43.3
Prupe.4G104500 Prunus persica HOM05D000054 ORTHO05D000286 7.4e-08 61.2 67 47.8
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 7.4e-08 61.2 81 38.3
RcHm_v2.0_Chr5g0018891 Rosa chinensis HOM05D000054 ORTHO05D000286 7.4e-08 61.2 71 46.5
SEGI_10098 Sequoiadendron giganteum HOM05D000054 ORTHO05D008307 7.4e-08 61.2 58 48.3
CARHR045870 Cardamine hirsuta HOM05D000054 ORTHO05D000286 9.7e-08 60.8 67 44.8
Manes.06G174700 Manihot esculenta HOM05D000054 ORTHO05D000171 9.7e-08 60.8 67 41.8
BcaC03g16566 Brassica carinata HOM05D000054 ORTHO05D000286 1.3e-07 60.5 67 46.3
BcaC08g46474 Brassica carinata HOM05D000054 ORTHO05D000286 1.3e-07 60.5 67 43.3
C02p43800 Brassica napus HOM05D000054 ORTHO05D000286 1.3e-07 60.5 67 46.3
C06p44130 Brassica napus HOM05D000054 ORTHO05D000286 1.3e-07 60.5 67 43.3
BolC6t39485H Brassica oleracea HOM05D000054 ORTHO05D000286 1.3e-07 60.5 67 43.3
A02p27710 Brassica napus HOM05D000054 ORTHO05D000286 1.7e-07 60.1 67 43.3
BolC2t10430H Brassica oleracea HOM05D000054 ORTHO05D000286 1.7e-07 60.1 70 47.1
BraA02t07811Z Brassica rapa HOM05D000054 ORTHO05D000286 1.7e-07 60.1 67 43.3
CAN.G943.46 Capsicum annuum HOM05D000054 ORTHO05D000286 1.7e-07 60.1 58 48.3
CAN.G943.47 Capsicum annuum HOM05D000054 ORTHO05D000286 1.7e-07 60.1 58 48.3
FAN21G3696 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.7e-07 60.1 68 44.1
Nn7g36971 Nelumbo nucifera HOM05D000054 ORTHO05D000286 1.7e-07 60.1 78 41.0
RcHm_v2.0_Chr2g0114821 Rosa chinensis HOM05D000054 ORTHO05D000286 1.7e-07 60.1 85 36.5
BcaC03g16568 Brassica carinata HOM05D000054 ORTHO05D000286 2.2e-07 59.7 70 45.7
C02p43820 Brassica napus HOM05D000054 ORTHO05D010039 2.2e-07 59.7 70 45.7
CANSAT80G1275 Cannabis sativa HOM05D000054 ORTHO05D000286 2.2e-07 59.7 63 44.4
Thhalv10012222m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 2.2e-07 59.7 70 48.6
Aa31LG10G120 Aethionema arabicum HOM05D000054 ORTHO05D000286 2.8e-07 59.3 67 44.8
BcaC06g34667 Brassica carinata HOM05D000054 ORTHO05D000286 2.8e-07 59.3 85 38.8
C02p54920 Brassica napus HOM05D000054 ORTHO05D010039 2.8e-07 59.3 70 45.7
C07p25870 Brassica napus HOM05D000054 ORTHO05D000286 2.8e-07 59.3 85 38.8
BolC7t43107H Brassica oleracea HOM05D000054 ORTHO05D000286 2.8e-07 59.3 85 38.8
CANSAT80G2409 Cannabis sativa HOM05D000054 ORTHO05D000171 2.8e-07 59.3 63 44.4
DCAR_019923 Daucus carota HOM05D000054 ORTHO05D000286 2.8e-07 59.3 85 35.3
Dinv42489 Davidia involucrata HOM05D000054 ORTHO05D000286 2.8e-07 59.3 67 41.8
Lj2A339T47 Lonicera japonica HOM05D000054 ORTHO05D000171 2.8e-07 59.3 66 47.0
Prupe.4G104900 Prunus persica HOM05D000054 ORTHO05D000286 2.8e-07 59.3 67 46.3
Sp2g08080 Schrenkiella parvula HOM05D000054 ORTHO05D000286 2.8e-07 59.3 67 43.3
TAR626G0314 Trochodendron aralioides HOM05D000054 ORTHO05D000286 2.8e-07 59.3 67 46.3
BcaB04g16918 Brassica carinata HOM05D000054 ORTHO05D000286 3.7e-07 58.9 67 43.3
BcaC04g21939 Brassica carinata HOM05D000054 ORTHO05D000286 3.7e-07 58.9 70 47.1
A09p20230 Brassica napus HOM05D000054 ORTHO05D010039 3.7e-07 58.9 70 47.1
C02p27520 Brassica napus HOM05D000054 ORTHO05D000286 3.7e-07 58.9 67 44.8
Dinv00485 Davidia involucrata HOM05D000054 ORTHO05D000286 3.7e-07 58.9 67 41.8
Eucgr.F04306 Eucalyptus grandis HOM05D000054 ORTHO05D000286 3.7e-07 58.9 69 43.5
MD15G1240200 Malus domestica HOM05D000054 ORTHO05D000286 3.7e-07 58.9 69 43.5
Nn7g37889 Nelumbo nucifera HOM05D000054 ORTHO05D000286 3.7e-07 58.9 67 44.8
Aqoxy1G01465 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 4.8e-07 58.5 54 44.4
C02p23880 Brassica napus HOM05D000054 ORTHO05D000286 4.8e-07 58.5 67 43.3
ECA236G2231 Erigeron canadensis HOM05D000054 ORTHO05D000286 4.8e-07 58.5 67 41.8
HanXRQChr11g0335781 Helianthus annuus HOM05D000054 ORTHO05D000286 4.8e-07 58.5 55 47.3
TAR627G0871 Trochodendron aralioides HOM05D000054 ORTHO05D000286 6.3e-07 58.2 67 46.3
MSTRG.14554 Avicennia marina HOM05D000054 ORTHO05D000286 8.2e-07 57.8 54 48.1
BolC2t10423H Brassica oleracea HOM05D000054 ORTHO05D010247 8.2e-07 57.8 78 42.3
BcaB07g30587 Brassica carinata HOM05D000054 ORTHO05D000286 1.1e-06 57.4 67 44.8
MBI14_g17546_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 1.1e-06 57.4 71 45.1
Thhalv10000587m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 1.4e-06 57.0 67 38.8
Lsat_1_v5_gn_7_111841 Lactuca sativa HOM05D000054 ORTHO05D000286 1.4e-06 57.0 60 41.7
MBI01_g45805_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 1.4e-06 57.0 58 44.8
Thecc.07G163600 Theobroma cacao HOM05D000054 ORTHO05D000171 1.4e-06 57.0 55 47.3
AL1G64430 Arabidopsis lyrata HOM05D000054 ORTHO05D000286 1.8e-06 56.6 67 40.3
Medtr8g461110 Medicago truncatula HOM05D000054 ORTHO05D000171 1.8e-06 56.6 53 49.1
Sp1g41790 Schrenkiella parvula HOM05D000054 ORTHO05D000286 1.8e-06 56.6 67 40.3
BcaB04g16917 Brassica carinata HOM05D000054 ORTHO05D000286 2.4e-06 56.2 67 40.3
Eucgr.F04430 Eucalyptus grandis HOM05D000054 ORTHO05D000286 2.4e-06 56.2 76 38.2
QL04p079377 Quercus lobata HOM05D000054 ORTHO05D000286 2.4e-06 56.2 55 45.5
GSVIVG01029720001 Vitis vinifera HOM05D000054 ORTHO05D000286 3.1e-06 55.8 72 37.5
Carub.0001s4475 Capsella rubella HOM05D000054 ORTHO05D000286 4.1e-06 55.5 67 38.8
Sp1g41780 Schrenkiella parvula HOM05D000054 ORTHO05D000286 4.1e-06 55.5 67 41.8
TPR.G36547 Trifolium pratense HOM05D000054 ORTHO05D000171 4.1e-06 55.5 54 46.3
FvH4_1g21070 Fragaria vesca HOM05D000054 ORTHO05D000286 5.3e-06 55.1 85 34.1
GSVIVG01029718001 Vitis vinifera HOM05D000054 ORTHO05D000171 5.3e-06 55.1 73 35.6
Thhalv10012006m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 6.9e-06 54.7 67 40.3
Psat4g176960 Pisum sativum HOM05D000054 ORTHO05D000171 6.9e-06 54.7 54 50.0
QL05p063431 Quercus lobata HOM05D000054 ORTHO05D000286 6.9e-06 54.7 58 51.7
C09p25650 Brassica napus HOM05D000054 ORTHO05D000286 9.1e-06 54.3 59 50.8
CiPaw.11G063300 Carya illinoinensis HOM05D000054 ORTHO05D000171 9.1e-06 54.3 54 46.3
Manes.06G174600 Manihot esculenta HOM05D000054 ORTHO05D000286 9.1e-06 54.3 54 48.1
SGA_v2.0_scaffold49G18181 Striga asiatica HOM05D000054 ORTHO05D000286 9.1e-06 54.3 87 33.3


User provided reference genes

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