Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14182 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.7e-68 260.8 129 100.0
SEGI_00902 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 1.3e-35 153.3 77 100.0
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 6.4e-11 71.2 96 42.7
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 1.4e-10 70.1 75 48.0
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 1.9e-10 69.7 75 48.0
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 2.4e-10 69.3 74 48.6
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 4.1e-10 68.6 78 50.0
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 4.1e-10 68.6 74 45.9
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 7.0e-10 67.8 75 48.0
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 9.2e-10 67.4 76 44.7
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 1.6e-09 66.6 92 44.6
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 1.6e-09 66.6 85 45.9
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 3.5e-09 65.5 62 54.8
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 6.0e-09 64.7 87 46.0
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 7.8e-09 64.3 74 47.3
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 7.8e-09 64.3 86 48.8
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 7.8e-09 64.3 85 44.7
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 7.8e-09 64.3 49 63.3
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.0e-08 63.9 81 46.9
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 1.0e-08 63.9 90 41.1
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 1.0e-08 63.9 89 43.8
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 1.0e-08 63.9 89 42.7
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 1.3e-08 63.5 93 43.0
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.3e-08 63.5 81 45.7
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.3e-08 63.5 81 45.7
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 1.3e-08 63.5 83 47.0
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 1.7e-08 63.2 75 44.0
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 3.0e-08 62.4 87 42.5
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 3.0e-08 62.4 49 59.2
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 3.9e-08 62.0 68 52.9
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 3.9e-08 62.0 68 52.9
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 3.9e-08 62.0 68 52.9
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 3.9e-08 62.0 68 52.9
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 3.9e-08 62.0 94 42.6
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 3.9e-08 62.0 82 47.6
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 3.9e-08 62.0 91 42.9
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 5.0e-08 61.6 48 62.5
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 6.6e-08 61.2 48 62.5
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 6.6e-08 61.2 49 59.2
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 6.6e-08 61.2 49 59.2
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 6.6e-08 61.2 49 59.2
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 8.6e-08 60.8 66 48.5
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.1e-07 60.5 49 59.2
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.1e-07 60.5 49 59.2
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 1.1e-07 60.5 78 46.2
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 1.5e-07 60.1 68 51.5
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 1.5e-07 60.1 83 45.8
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.9e-07 59.7 81 44.4
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 1.9e-07 59.7 90 42.2
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 2.5e-07 59.3 49 61.2
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 2.5e-07 59.3 85 40.0
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 3.3e-07 58.9 92 40.2
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 3.3e-07 58.9 49 57.1
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 3.3e-07 58.9 48 58.3
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 4.3e-07 58.5 106 37.7
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 4.3e-07 58.5 92 40.2
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 4.3e-07 58.5 77 45.5
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 4.3e-07 58.5 81 44.4
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 4.3e-07 58.5 49 57.1
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 5.6e-07 58.2 48 60.4
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 5.6e-07 58.2 91 41.8
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 5.6e-07 58.2 51 52.9
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 7.3e-07 57.8 81 45.7
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 7.3e-07 57.8 81 45.7
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 7.3e-07 57.8 74 41.9
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 7.3e-07 57.8 95 37.9
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 9.5e-07 57.4 49 57.1
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 1.6e-06 56.6 92 39.1
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 1.6e-06 56.6 89 42.7
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 1.6e-06 56.6 48 56.2
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 2.1e-06 56.2 91 39.6
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 2.1e-06 56.2 91 38.5
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 2.8e-06 55.8 49 59.2
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 2.8e-06 55.8 90 36.7
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 3.6e-06 55.5 92 39.1
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 4.7e-06 55.1 66 56.1
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 4.7e-06 55.1 89 40.4
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 4.7e-06 55.1 50 52.0
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 6.2e-06 54.7 87 39.1
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 6.2e-06 54.7 49 53.1
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 6.2e-06 54.7 49 53.1
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 8.1e-06 54.3 49 53.1
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 8.1e-06 54.3 48 52.1


User provided reference genes

Program Settings