Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.1e-125 452.2 497 100.0
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.5e-121 440.7 216 100.0
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.4e-42 176.4 200 44.5
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 7.1e-42 176.0 167 50.9
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 7.1e-42 176.0 191 44.5
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 3.5e-41 173.7 177 45.2
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 4.6e-41 173.3 204 45.6
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 4.6e-41 173.3 210 43.3
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 6.0e-41 172.9 196 45.4
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 6.0e-41 172.9 193 45.1
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 7.8e-41 172.6 171 47.4
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.0e-40 170.6 196 45.4
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.9e-40 170.2 222 41.4
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.5e-39 168.3 166 46.4
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 1.9e-39 167.9 202 42.6
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 7.3e-39 166.0 217 41.9
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 4.7e-38 163.3 188 44.7
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 4.7e-38 163.3 180 42.8
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 6.2e-38 162.9 187 43.3
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 6.2e-38 162.9 184 42.9
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 1.4e-37 161.8 211 40.8
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.4e-37 161.0 171 42.7
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 3.1e-37 160.6 197 43.1
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 4.0e-37 160.2 180 43.3
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.0e-37 160.2 166 44.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.2e-37 159.8 177 44.1
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 6.9e-37 159.5 193 43.0
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 9.0e-37 159.1 210 41.4
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 9.0e-37 159.1 214 37.9
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 9.0e-37 159.1 173 43.4
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.5e-36 158.3 140 47.1
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.5e-36 158.3 215 40.0
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 4.4e-36 156.8 204 41.7
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 4.4e-36 156.8 189 41.8
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 5.8e-36 156.4 162 46.9
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.3e-35 155.2 180 42.2
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.7e-35 154.8 187 41.2
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 2.9e-35 154.1 196 43.9
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 6.4e-35 152.9 179 40.2
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.4e-34 151.8 197 39.6
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 3.2e-34 150.6 182 41.8
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 4.2e-34 150.2 201 41.8
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 4.2e-34 150.2 196 41.3
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 7.1e-34 149.4 189 40.2
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 7.1e-34 149.4 189 40.2
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.2e-33 148.7 197 41.1
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 1.6e-33 148.3 185 40.0
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 2.1e-33 147.9 182 39.0
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 2.7e-33 147.5 151 45.0
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 3.5e-33 147.1 188 39.4
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 3.5e-33 147.1 183 41.5
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 4.6e-33 146.7 179 40.2
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 6.0e-33 146.4 183 42.1
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 7.8e-33 146.0 183 41.5
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.3e-32 145.2 171 38.6
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 2.3e-32 144.4 171 38.6
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 2.3e-32 144.4 190 40.5
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 5.1e-32 143.3 163 41.7
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 5.1e-32 143.3 178 39.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 8.7e-32 142.5 144 43.8
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 8.7e-32 142.5 185 38.4
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 8.7e-32 142.5 185 38.4
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.5e-31 141.0 162 39.5
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 7.3e-31 139.4 185 37.8
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 7.3e-31 139.4 147 46.3
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 9.6e-31 139.0 145 41.4
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.6e-30 138.3 177 39.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.6e-30 137.1 209 37.3
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.6e-30 137.1 209 37.3
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 3.6e-30 137.1 193 37.3
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 6.2e-30 136.3 156 41.7
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 8.1e-30 136.0 176 36.9
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 1.1e-29 135.6 209 37.3
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.4e-29 135.2 210 37.1
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 1.4e-29 135.2 209 36.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.8e-29 134.8 195 38.5
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.8e-29 134.8 193 36.8
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 2.4e-29 134.4 198 37.4
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 5.3e-29 133.3 209 36.8
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 5.3e-29 133.3 209 36.8
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 9.0e-29 132.5 177 36.2
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 1.2e-28 132.1 208 35.1
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.2e-28 132.1 203 35.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.2e-28 132.1 118 49.2
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 2.9e-27 127.5 135 41.5
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 6.4e-27 126.3 203 38.9
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 1.1e-26 125.6 168 35.7
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 4.2e-26 123.6 165 37.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 2.1e-25 121.3 106 54.7
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.1e-25 121.3 108 50.0
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 6.0e-25 119.8 141 41.1
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 3.9e-24 117.1 136 39.7
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.5e-23 115.2 191 34.0
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 2.5e-23 114.4 185 35.1
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.6e-22 111.7 104 47.1
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 3.4e-20 104.0 88 54.5
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 4.5e-20 103.6 194 32.0
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.1e-18 99.0 104 40.4
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 8.7e-16 89.4 111 38.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 2.4e-13 81.3 104 36.5
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 7.6e-12 76.3 229 26.2
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.9e-11 73.6 216 27.3
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 3.2e-10 70.9 133 32.3
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 9.3e-10 69.3 155 29.7
ATR0665G439 Amborella trichopoda HOM05D007486 ORTHO05D003673 1.6e-09 68.6 207 27.1
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 1.0e-08 65.9 169 27.8
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.8e-08 65.1 133 28.6
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 3.0e-08 64.3 133 30.8
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 3.0e-08 64.3 133 29.3
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 3.9e-08 63.9 201 26.4
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 5.1e-08 63.5 180 26.1
Sc17g0005920 Simmondsia chinensis HOM05D002986 ORTHO05D007611 5.1e-08 63.5 126 34.1
Nitab4.5_0001837g0040 Nicotiana tabacum HOM05D007172 ORTHO05D009267 6.7e-08 63.2 164 28.7
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 8.7e-08 62.8 133 30.1
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 8.7e-08 62.8 133 27.8
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 1.1e-07 62.4 133 28.6
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 1.1e-07 62.4 157 28.7
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 1.5e-07 62.0 133 29.3
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 1.5e-07 62.0 133 29.3
TWI75G1283 Tripterygium wilfordii HOM05D007402 ORTHO05D003673 1.5e-07 62.0 182 24.7
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 1.9e-07 61.6 133 27.1
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.9e-07 61.6 133 26.3
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.5e-07 61.2 133 25.6
SalBow5G3690 Salvia bowleyana HOM05D007172 ORTHO05D009267 2.5e-07 61.2 148 29.1
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 3.3e-07 60.8 171 26.3
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 4.3e-07 60.5 133 28.6
Phvul.011G073100 Phaseolus vulgaris HOM05D007402 ORTHO05D003673 4.3e-07 60.5 184 26.1
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 4.3e-07 60.5 131 28.2
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 4.3e-07 60.5 131 28.2
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 4.3e-07 60.5 123 30.1
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 5.7e-07 60.1 173 24.9
AUR62042945 Chenopodium quinoa HOM05D007172 ORTHO05D009267 7.4e-07 59.7 159 25.2
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 7.4e-07 59.7 133 28.6
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 7.4e-07 59.7 46 58.7
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.4e-07 59.7 46 58.7
TPR.G36407 Trifolium pratense HOM05D007402 ORTHO05D003673 9.7e-07 59.3 184 22.8
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 9.7e-07 59.3 133 28.6
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.3e-06 58.9 46 58.7
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 1.3e-06 58.9 133 27.8
Gohir.D12G179500 Gossypium hirsutum HOM05D002453 ORTHO05D002107 1.3e-06 58.9 133 27.8
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 1.3e-06 58.9 133 27.8
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 1.3e-06 58.9 133 29.3
Lj2P1035T18 Lonicera japonica HOM05D007402 ORTHO05D003673 1.6e-06 58.5 182 23.6
Nitab4.5_0000008g0800 Nicotiana tabacum HOM05D007172 ORTHO05D009267 1.6e-06 58.5 151 28.5
GSVIVG01034953001 Vitis vinifera HOM05D007409 ORTHO05D009264 1.6e-06 58.5 140 31.4
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 2.2e-06 58.2 176 24.4
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 2.2e-06 58.2 132 29.5
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 2.2e-06 58.2 133 30.1
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 2.2e-06 58.2 133 30.1
DCAR_030451 Daucus carota HOM05D007409 ORTHO05D009264 2.2e-06 58.2 142 30.3
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 2.8e-06 57.8 133 27.8
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 2.8e-06 57.8 162 27.8
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 2.8e-06 57.8 133 29.3
PGR083G2565 Punica granatum HOM05D002986 ORTHO05D007611 2.8e-06 57.8 126 30.2
arahy.Tifrunner.gnm1.ann1.IL2A8L Arachis hypogaea HOM05D002986 ORTHO05D007611 3.7e-06 57.4 126 28.6
arahy.Tifrunner.gnm1.ann1.IYAJ8R Arachis hypogaea HOM05D002986 ORTHO05D007611 3.7e-06 57.4 126 28.6
CSS0042999 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 3.7e-06 57.4 132 29.5
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 3.7e-06 57.4 112 33.0
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 3.7e-06 57.4 173 22.0
PSO541G6128 Papaver somniferum HOM05D007409 ORTHO05D009264 3.7e-06 57.4 160 28.8
Sed0010667 Sechium edule HOM05D007402 ORTHO05D003673 3.7e-06 57.4 196 24.5
EL10Ac5g11526 Beta vulgaris HOM05D007172 ORTHO05D009267 4.8e-06 57.0 147 25.9
CSS0040504 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 4.8e-06 57.0 132 29.5
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 4.8e-06 57.0 205 24.9
AUR62014868 Chenopodium quinoa HOM05D002986 ORTHO05D007611 4.8e-06 57.0 129 29.5
Cc02_g13870 Coffea canephora HOM05D002986 ORTHO05D007611 4.8e-06 57.0 126 29.4
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 4.8e-06 57.0 133 30.8
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 4.8e-06 57.0 112 33.0
AUR62031074 Chenopodium quinoa HOM05D002986 ORTHO05D007611 6.3e-06 56.6 129 28.7
COL.COLO4_19319 Corchorus olitorius HOM05D007486 ORTHO05D003673 6.3e-06 56.6 219 23.3
DCAR_018726 Daucus carota HOM05D007172 ORTHO05D009267 6.3e-06 56.6 149 24.8
Glyma.12G071400 Glycine max HOM05D007402 ORTHO05D003673 6.3e-06 56.6 184 23.4
Lj6g0015281 Lotus japonicus HOM05D002986 ORTHO05D007611 6.3e-06 56.6 126 27.8
Thecc.05G021800 Theobroma cacao HOM05D007172 ORTHO05D009267 6.3e-06 56.6 137 24.1
CAN.G582.2 Capsicum annuum HOM05D007409 ORTHO05D009264 8.2e-06 56.2 143 27.3
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 8.2e-06 56.2 117 29.9
Manes.13G051900 Manihot esculenta HOM05D007486 ORTHO05D003673 8.2e-06 56.2 176 24.4
Psat1g202920 Pisum sativum HOM05D002986 ORTHO05D007611 8.2e-06 56.2 121 28.1
Potri.018G093700 Populus trichocarpa HOM05D007402 ORTHO05D003673 8.2e-06 56.2 143 23.8
TPR.G11746 Trifolium pratense HOM05D002986 ORTHO05D007611 8.2e-06 56.2 121 28.1
vmacro03903 Vaccinium macrocarpon HOM05D002986 ORTHO05D007611 8.2e-06 56.2 132 28.0
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 8.2e-06 56.2 133 28.6


User provided reference genes

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