Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 4.2e-150 534.6 266 100.0
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 7.6e-67 258.1 183 63.4
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.7e-66 256.9 218 56.9
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 2.4e-65 253.1 208 59.6
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.6e-64 250.4 183 63.9
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 4.6e-64 248.8 183 65.0
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 6.0e-64 248.4 196 57.7
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 7.8e-64 248.1 183 65.6
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.0e-63 247.7 180 62.2
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 1.3e-63 247.3 183 61.2
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 1.7e-63 246.9 183 63.9
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.3e-63 246.5 183 64.5
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 2.3e-63 246.5 183 64.5
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 3.0e-63 246.1 183 64.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 3.0e-63 246.1 180 60.6
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 3.9e-63 245.7 183 63.9
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 3.9e-63 245.7 183 63.4
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 5.1e-63 245.4 186 62.4
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 5.1e-63 245.4 180 63.3
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 8.7e-63 244.6 183 62.8
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.5e-62 243.8 183 62.8
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 4.3e-62 242.3 183 60.7
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 5.6e-62 241.9 183 61.7
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 9.6e-62 241.1 180 61.1
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.3e-61 240.7 183 59.0
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 2.1e-61 240.0 183 63.4
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 2.1e-61 240.0 181 62.4
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 6.2e-61 238.4 182 62.1
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 8.1e-61 238.0 183 61.2
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.1e-60 237.7 183 60.1
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.4e-60 237.3 183 59.0
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.8e-60 236.9 183 59.0
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 2.4e-60 236.5 183 62.3
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.4e-60 236.5 183 61.2
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 2.4e-60 236.5 183 59.6
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 2.4e-60 236.5 183 59.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 3.1e-60 236.1 183 59.6
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 4.0e-60 235.7 182 59.3
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 5.3e-60 235.3 182 59.9
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 6.9e-60 235.0 183 58.5
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 6.9e-60 235.0 183 58.5
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 6.9e-60 235.0 185 63.8
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 6.9e-60 235.0 183 61.7
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 6.9e-60 235.0 261 47.9
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 9.0e-60 234.6 180 58.3
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 1.5e-59 233.8 182 59.9
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 2.0e-59 233.4 179 61.5
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 2.0e-59 233.4 183 58.5
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.0e-59 233.4 182 59.3
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 2.6e-59 233.0 183 57.9
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 3.4e-59 232.6 183 60.1
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 3.4e-59 232.6 183 60.1
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 5.8e-59 231.9 180 61.7
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 7.6e-59 231.5 180 61.1
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.3e-58 230.7 198 57.6
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.3e-58 230.7 198 57.6
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.3e-58 230.7 198 57.6
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.3e-58 230.7 180 59.4
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.7e-58 230.3 180 59.4
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 1.7e-58 230.3 180 59.4
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 2.2e-58 229.9 183 57.9
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 2.2e-58 229.9 180 58.9
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 2.2e-58 229.9 180 59.4
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 2.9e-58 229.6 180 58.9
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 2.9e-58 229.6 180 58.9
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 2.9e-58 229.6 180 58.9
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 2.9e-58 229.6 181 60.2
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.8e-58 229.2 184 58.2
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 6.4e-58 228.4 180 58.9
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.4e-58 228.4 198 57.6
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.4e-58 228.4 198 57.1
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 1.1e-57 227.6 183 61.2
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 1.1e-57 227.6 184 57.1
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.4e-57 227.3 183 57.9
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.4e-57 227.3 183 56.8
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.4e-57 227.3 183 57.9
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 2.4e-57 226.5 190 56.8
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 4.2e-57 225.7 184 56.5
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 5.4e-57 225.3 183 56.3
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 1.2e-56 224.2 212 53.3
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 4.6e-56 222.2 206 54.9
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 7.9e-56 221.5 206 54.9
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.8e-55 220.3 180 57.2
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.8e-55 220.3 184 56.5
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 2.3e-55 219.9 183 56.3
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 1.5e-54 217.2 181 58.0
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 4.3e-54 215.7 150 62.0
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 4.3e-54 215.7 164 61.0
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.6e-53 213.8 183 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 4.8e-53 212.2 179 54.2
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 2.4e-52 209.9 150 62.7
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.2e-51 207.6 177 58.8
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 7.6e-51 204.9 183 54.1
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 7.6e-51 204.9 183 54.1
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 4.9e-50 202.2 150 61.3
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 3.5e-48 196.1 136 66.9
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.9e-47 192.6 210 47.6
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 8.7e-47 191.4 154 59.1
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 3.3e-46 189.5 132 62.9
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 4.0e-44 182.6 183 52.5
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.7e-34 150.6 197 44.2
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 6.5e-34 148.7 132 53.0
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 6.1e-32 142.1 121 57.9
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.1e-30 137.9 120 54.2
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 2.8e-29 133.3 127 55.1
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 9.1e-28 128.3 149 47.0
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.9e-26 123.2 180 45.0
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 6.5e-26 122.1 123 53.7
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 6.1e-24 115.5 108 50.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 6.5e-18 95.5 56 71.4
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 1.1e-14 84.7 75 58.7
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.9e-11 72.4 49 67.3
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 5.9e-11 72.4 81 48.1
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.6e-08 64.3 190 25.8
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 2.1e-08 63.9 187 26.7
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.0e-07 61.6 193 26.4
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-07 61.2 108 33.3
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-07 60.8 108 32.4
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.3e-07 60.5 196 26.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-07 60.1 107 31.8
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 5.2e-07 59.3 184 25.5
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 6.7e-07 58.9 174 23.6
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 8.8e-07 58.5 174 23.0
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.2e-06 58.2 179 23.5
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.0e-06 57.4 102 33.3
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.6e-06 57.0 108 31.5
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.6e-06 57.0 108 31.5
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.6e-06 57.0 176 26.1
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 2.6e-06 57.0 187 25.1
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 2.6e-06 57.0 180 25.6
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 3.3e-06 56.6 102 32.4
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 3.3e-06 56.6 176 26.1
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 3.3e-06 56.6 176 26.1
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 3.3e-06 56.6 189 24.3
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.4e-06 56.2 174 23.6
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 4.4e-06 56.2 122 27.9
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 4.4e-06 56.2 111 32.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 4.4e-06 56.2 111 32.4
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 4.4e-06 56.2 178 26.4
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.7e-06 55.8 175 26.3
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 5.7e-06 55.8 182 25.3
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.5e-06 55.5 177 25.4
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 7.5e-06 55.5 182 24.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 7.5e-06 55.5 174 23.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 9.7e-06 55.1 182 24.2
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 9.7e-06 55.1 103 31.1


User provided reference genes

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