Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.6e-132 475.3 231 100.0
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.8e-36 154.8 85 91.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.1e-27 125.6 87 70.1
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 8.7e-27 124.8 85 72.9
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.5e-26 123.2 85 72.9
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.5e-26 123.2 85 71.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 3.3e-26 122.9 85 71.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 4.3e-26 122.5 85 71.8
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.3e-26 122.5 85 70.6
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 5.6e-26 122.1 93 64.5
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.4e-26 121.7 85 71.8
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 7.4e-26 121.7 85 70.6
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 9.6e-26 121.3 85 71.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.6e-26 121.3 85 70.6
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.6e-25 120.6 85 69.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.6e-25 120.6 85 70.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 65.9
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 70.6
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 69.4
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 69.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 69.4
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.1e-25 120.2 85 68.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.8e-25 119.8 85 68.2
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.8e-25 119.8 85 69.4
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.8e-25 119.8 85 68.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 3.7e-25 119.4 85 68.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.8e-25 119.0 85 69.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.2e-25 118.6 85 69.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 8.1e-25 118.2 85 65.9
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.1e-24 117.9 85 68.2
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.1e-24 117.9 86 67.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-24 117.9 85 68.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.1e-24 117.9 85 68.2
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.4e-24 117.5 85 68.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-24 117.5 87 65.5
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.4e-24 117.5 85 68.2
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.4e-24 117.5 85 68.2
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.8e-24 117.1 85 67.1
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.8e-24 117.1 85 68.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.8e-24 117.1 85 68.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.4e-24 116.7 85 63.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 2.4e-24 116.7 86 66.3
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.1e-24 116.3 86 66.3
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.1e-24 116.3 85 67.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.1e-24 116.3 89 62.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.0e-24 115.9 85 68.2
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.0e-24 115.9 130 48.5
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 4.0e-24 115.9 85 69.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.0e-24 115.9 85 69.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.0e-24 115.9 85 68.2
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 5.3e-24 115.5 85 65.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 5.3e-24 115.5 85 65.9
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 6.9e-24 115.2 85 64.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.9e-24 115.2 85 68.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.9e-24 115.2 85 67.1
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 9.0e-24 114.8 85 67.1
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.0e-24 114.8 85 67.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.2e-23 114.4 85 68.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-23 114.4 87 64.4
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.2e-23 114.4 85 67.1
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-23 114.0 85 67.1
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.5e-23 114.0 85 65.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-23 114.0 85 65.9
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-23 114.0 85 67.1
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.0e-23 113.6 85 67.1
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.0e-23 113.6 85 64.7
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.0e-23 113.6 85 65.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.0e-23 113.6 85 64.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.0e-23 113.6 84 67.9
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-23 113.2 134 49.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.4e-23 112.8 85 65.9
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 4.5e-23 112.5 117 51.3
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.5e-23 112.5 85 65.9
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.5e-23 112.5 85 65.9
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 63.5
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 62.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 65.9
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 65.9
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 65.9
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 64.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 64.7
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 61.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 65.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 62.4
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 65.9
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 62.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 65.9
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 64.7
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 63.5
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.6e-23 111.7 87 63.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 9.9e-23 111.3 85 67.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 9.9e-23 111.3 84 65.5
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 9.9e-23 111.3 85 64.7
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 9.9e-23 111.3 85 63.5
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.3e-22 110.9 85 64.7
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.3e-22 110.9 85 64.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-22 110.5 85 62.4
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-22 110.5 85 62.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.7e-22 110.5 85 62.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.2e-22 110.2 85 65.9
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.2e-22 110.2 85 64.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.2e-22 110.2 93 55.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.2e-22 110.2 85 64.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.9e-22 109.8 85 62.4
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.9e-22 109.8 85 62.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.9e-22 109.8 86 62.8
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.9e-22 109.8 85 61.2
SEGI_14065 Sequoiadendron giganteum HOM05D000188 ORTHO05D000362 2.9e-22 109.8 105 60.0
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 3.8e-22 109.4 85 63.5
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 4.9e-22 109.0 85 61.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.9e-22 109.0 85 61.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 6.4e-22 108.6 85 61.2
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 6.4e-22 108.6 85 62.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 8.4e-22 108.2 85 62.4
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 8.4e-22 108.2 85 61.2
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.4e-22 108.2 86 65.1
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 8.4e-22 108.2 86 64.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 8.4e-22 108.2 86 62.8
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 8.4e-22 108.2 85 65.9
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.1e-21 107.8 85 61.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-21 107.8 85 62.4
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-21 107.1 85 60.0
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-21 106.7 85 63.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 3.2e-21 106.3 85 63.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.2e-21 105.9 85 64.7
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.2e-21 105.9 86 61.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.5e-21 105.5 85 62.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.1e-21 105.1 86 60.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.2e-20 104.4 85 61.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.2e-20 104.4 85 62.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-20 104.4 85 61.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-20 104.0 85 61.2
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.1e-20 103.6 83 60.2
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.5e-20 102.8 84 59.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.5e-20 102.8 85 60.0
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.5e-20 102.8 85 60.0
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 6.0e-20 102.1 77 68.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-19 101.3 82 61.0
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.0e-19 101.3 86 59.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.3e-19 100.1 91 57.1
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 5.1e-19 99.0 85 61.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 5.1e-19 99.0 98 53.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-18 97.8 85 58.8
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-18 97.1 95 53.7
SEGI_27884 Sequoiadendron giganteum HOM05D000555 ORTHO05D017321 5.6e-18 95.5 60 80.0
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.4e-18 95.1 84 53.6
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.3e-17 94.4 86 57.0
SEGI_06434 Sequoiadendron giganteum HOM05D005428 ORTHO05D006876 1.6e-17 94.0 50 84.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.1e-16 91.3 93 51.6
SEGI_32796 Sequoiadendron giganteum HOM05D000246 ORTHO05D009140 3.1e-16 89.7 58 70.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.0e-15 87.0 86 54.7
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-15 86.7 72 55.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.2e-14 83.6 85 51.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.2e-13 79.3 167 32.3
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.2e-12 77.8 60 56.7
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-11 74.3 60 56.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-11 73.6 87 50.6
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 6.7e-11 72.0 47 68.1
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 7.4e-10 68.6 58 53.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.6e-09 67.4 51 60.8
SEGI_32961 Sequoiadendron giganteum HOM05D001206 ORTHO05D002068 1.6e-09 67.4 90 44.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.7e-09 66.2 48 60.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 6.3e-09 65.5 46 63.0
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.8e-08 63.9 47 59.6
SEGI_17824 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 1.8e-08 63.9 105 41.9
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 6.9e-08 62.0 38 73.7
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-07 60.5 66 47.0
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 2.6e-07 60.1 59 55.9


User provided reference genes

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