Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.7e-44 182.2 88 100.0
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.6e-18 95.9 82 53.7
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 2.8e-18 95.1 82 51.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 3.7e-18 94.7 82 52.4
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 4.8e-18 94.4 82 51.2
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.1e-17 93.2 82 52.4
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-17 93.2 82 52.4
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.4e-17 92.0 82 48.8
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.1e-17 91.7 82 50.0
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.1e-17 91.7 82 50.0
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 3.1e-17 91.7 82 50.0
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.1e-17 91.3 82 51.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 5.3e-17 90.9 82 50.0
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 9.0e-17 90.1 82 48.8
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.2e-16 89.7 82 50.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 1.5e-16 89.4 82 51.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.5e-16 89.4 82 50.0
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 51.2
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 51.2
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 51.2
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 50.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 48.8
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 48.8
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 50.0
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.0e-16 89.0 84 51.2
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.0e-16 89.0 82 50.0
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 2.6e-16 88.6 82 48.8
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.6e-16 88.6 82 48.8
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 3.4e-16 88.2 82 51.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 3.4e-16 88.2 83 48.2
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 4.5e-16 87.8 82 47.6
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 4.5e-16 87.8 82 50.0
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.5e-16 87.8 85 49.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.5e-16 87.8 86 48.8
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 4.5e-16 87.8 82 50.0
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.5e-16 87.8 82 48.8
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 5.9e-16 87.4 82 47.6
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.9e-16 87.4 82 48.8
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 5.9e-16 87.4 82 50.0
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 5.9e-16 87.4 82 48.8
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 5.9e-16 87.4 82 48.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 7.7e-16 87.0 82 48.8
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 7.7e-16 87.0 82 48.8
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 7.7e-16 87.0 82 48.8
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.0e-15 86.7 82 47.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.0e-15 86.7 80 48.8
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.0e-15 86.7 82 47.6
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.0e-15 86.7 81 49.4
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.3e-15 86.3 82 48.8
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.3e-15 86.3 82 47.6
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.7e-15 85.9 82 48.8
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.7e-15 85.9 82 48.8
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.7e-15 85.9 82 47.6
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.7e-15 85.9 82 47.6
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.7e-15 85.9 82 51.2
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 2.2e-15 85.5 82 47.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.9e-15 85.1 82 47.6
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.9e-15 85.1 81 49.4
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 2.9e-15 85.1 82 47.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.9e-15 85.1 82 47.6
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.9e-15 85.1 82 47.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.9e-15 85.1 82 47.6
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.8e-15 84.7 82 47.6
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 3.8e-15 84.7 82 48.8
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.8e-15 84.7 82 48.8
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.8e-15 84.7 82 47.6
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 47.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 46.3
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 46.3
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 47.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 46.3
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 46.3
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 46.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 48.8
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 48.8
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 5.0e-15 84.3 82 48.8
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 6.5e-15 84.0 82 48.8
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 6.5e-15 84.0 78 48.7
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 8.5e-15 83.6 82 47.6
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 8.5e-15 83.6 84 46.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 8.5e-15 83.6 82 46.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 8.5e-15 83.6 82 46.3
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 8.5e-15 83.6 82 46.3
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.1e-14 83.2 82 48.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.4e-14 82.8 82 47.6
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.4e-14 82.8 82 45.1
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.9e-14 82.4 82 47.6
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.5e-14 82.0 82 46.3
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 3.2e-14 81.6 82 45.1
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 5.5e-14 80.9 81 49.4
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.5e-14 80.9 81 45.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 5.5e-14 80.9 82 43.9
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 7.2e-14 80.5 82 43.9
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.2e-13 79.7 82 43.9
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 2.7e-13 78.6 82 43.9
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 2.7e-13 78.6 82 43.9
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 3.6e-13 78.2 82 42.7
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 3.6e-13 78.2 82 42.7
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.0e-12 76.6 82 42.7
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.4e-12 76.3 82 41.5
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.4e-12 76.3 82 42.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.3e-12 75.5 74 45.9
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 3.0e-12 75.1 82 41.5
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 5.1e-12 74.3 78 47.4
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.5e-11 72.8 64 50.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.5e-11 72.8 82 40.2
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 2.0e-11 72.4 108 38.0
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.3e-11 71.6 73 46.6
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 4.8e-10 67.8 81 39.5
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 2.4e-09 65.5 56 53.6
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.7e-07 59.3 78 35.9
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.9e-07 58.5 74 35.1
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 3.8e-07 58.2 56 48.2
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.1e-06 56.6 56 48.2
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.2e-06 55.1 59 45.8
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 4.2e-06 54.7 56 42.9
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 4.2e-06 54.7 56 42.9
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 7.2e-06 53.9 59 42.4


User provided reference genes

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