Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 7.0e-136 487.3 244 100.0
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-70 270.8 189 75.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-70 270.8 189 75.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.7e-57 226.9 188 62.8
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.1e-56 224.2 185 62.7
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.5e-56 223.0 189 63.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.2e-56 222.2 186 60.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 4.2e-56 222.2 155 71.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-55 220.3 186 61.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.6e-55 219.2 204 57.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 6.1e-55 218.4 185 60.0
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.0e-54 217.6 189 60.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.4e-54 217.2 185 61.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.8e-54 216.9 185 59.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.3e-54 216.5 185 60.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.0e-54 215.7 185 61.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.0e-54 215.7 189 59.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 5.2e-54 215.3 222 55.0
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 5.2e-54 215.3 185 59.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 8.8e-54 214.5 187 60.4
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.0e-53 213.4 187 59.9
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.3e-53 212.6 188 59.6
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 3.3e-53 212.6 185 61.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.3e-53 212.6 185 59.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 4.4e-53 212.2 189 59.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.4e-53 212.2 185 60.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 5.7e-53 211.8 189 59.3
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 5.7e-53 211.8 185 59.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.5e-53 211.5 189 58.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 7.5e-53 211.5 187 58.8
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 7.5e-53 211.5 185 58.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 9.7e-53 211.1 189 58.2
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.3e-52 210.7 185 59.5
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.7e-52 210.3 189 57.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.7e-52 210.3 189 59.8
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.8e-52 209.5 185 58.4
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.8e-52 209.5 184 58.7
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.8e-52 209.5 189 58.7
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.8e-52 209.5 189 58.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.7e-52 209.1 188 59.0
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.7e-52 209.1 189 57.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.7e-52 209.1 185 57.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.7e-52 209.1 190 56.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.3e-52 208.4 185 58.9
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.1e-51 207.6 189 57.1
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-51 207.2 185 58.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.4e-51 207.2 185 57.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.4e-51 207.2 185 60.0
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.8e-51 206.8 185 57.8
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.8e-51 206.8 186 60.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.1e-51 206.1 185 60.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 3.1e-51 206.1 185 56.8
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.1e-51 206.1 189 58.2
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.1e-51 205.7 185 58.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.1e-51 205.7 185 58.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 4.1e-51 205.7 185 56.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 4.1e-51 205.7 189 56.6
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.1e-51 205.7 189 56.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 5.3e-51 205.3 187 57.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 7.0e-51 204.9 185 57.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 7.0e-51 204.9 185 56.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.0e-51 204.9 185 60.5
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 9.1e-51 204.5 185 58.9
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-50 204.1 184 58.2
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-50 204.1 185 59.5
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-50 204.1 185 57.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.2e-50 204.1 189 58.2
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.2e-50 204.1 185 57.8
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.2e-50 204.1 194 55.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.6e-50 203.8 189 57.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.7e-50 203.0 185 58.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.7e-50 203.0 185 56.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.7e-50 203.0 185 58.9
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 3.5e-50 202.6 185 56.2
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 3.5e-50 202.6 186 57.0
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.5e-50 202.6 185 58.4
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.5e-50 202.2 185 58.4
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.5e-50 202.2 185 58.4
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 4.5e-50 202.2 185 56.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.5e-50 202.2 189 57.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.9e-50 201.8 191 58.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.7e-50 201.4 187 57.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.0e-49 201.1 201 54.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-49 199.9 191 56.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.2e-49 199.9 189 55.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.2e-49 199.9 185 58.4
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 2.9e-49 199.5 187 55.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.9e-49 199.5 185 58.4
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.9e-49 199.5 186 59.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 3.8e-49 199.1 230 47.8
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.8e-49 199.1 184 57.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 5.0e-49 198.7 199 53.8
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 8.5e-49 198.0 185 55.1
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-48 197.6 186 58.6
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.9e-48 196.8 185 55.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.9e-48 196.8 185 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.5e-48 196.4 190 54.2
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.5e-48 196.4 185 55.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.2e-48 196.1 189 56.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 5.5e-48 195.3 185 56.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 7.2e-48 194.9 187 54.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 9.4e-48 194.5 184 56.5
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 9.4e-48 194.5 187 55.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-47 194.1 187 55.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.2e-47 194.1 190 56.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.1e-47 193.4 186 54.3
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 3.6e-47 192.6 187 54.0
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 8.0e-47 191.4 187 54.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 8.0e-47 191.4 186 55.4
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.0e-46 191.0 186 54.3
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.8e-46 190.3 156 64.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.3e-46 189.9 186 53.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 5.2e-46 188.7 213 50.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 5.2e-46 188.7 189 54.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 6.8e-46 188.3 190 54.2
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.2e-45 187.6 185 53.5
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-45 187.6 185 52.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-45 187.6 186 53.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-45 187.2 186 53.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.5e-45 187.2 185 53.5
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-45 186.8 186 53.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.4e-45 186.0 185 55.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.4e-45 185.7 189 55.0
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 5.7e-45 185.3 187 52.9
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 7.5e-45 184.9 187 52.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 7.5e-45 184.9 187 52.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 8.3e-44 181.4 186 52.2
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-42 177.2 155 59.4
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.3e-40 169.5 175 53.7
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.6e-39 166.0 165 55.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.6e-39 166.0 165 55.2
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 8.3e-36 154.8 190 45.3
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.4e-35 152.1 158 54.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 8.0e-31 138.3 172 45.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 3.4e-29 132.9 243 37.0
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.2e-26 124.4 154 48.7
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 3.9e-25 119.4 89 68.5
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.8e-22 108.6 91 61.5
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 8.9e-22 108.2 91 60.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.5e-21 107.5 92 63.0
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.4e-20 102.1 177 37.9
SEGI_32760 Sequoiadendron giganteum HOM05D001936 ORTHO05D002296 3.0e-17 93.2 50 96.0
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.6e-17 91.7 72 63.9
SEGI_12402 Sequoiadendron giganteum HOM05D004515 ORTHO05D006676 8.6e-17 91.7 45 100.0
SEGI_04545 Sequoiadendron giganteum HOM05D000073 ORTHO05D006676 1.1e-16 91.3 49 95.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.3e-09 67.0 159 30.8


User provided reference genes

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