Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 2517.3 1306 100.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1323.1 1049 63.8
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1307.4 1183 58.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1070 61.4
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1111 59.9
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1256.5 1072 61.2
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1046 61.8
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1131 57.7
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1240.7 1077 59.1
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1239.6 1062 59.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1237.6 1130 56.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1236.1 1015 61.6
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 0.0e+00 1234.6 1128 59.3
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1233.8 1044 59.8
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1226.1 1070 58.4
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1220.3 1102 58.4
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1216.8 1053 58.2
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1215.3 998 60.9
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1214.5 1100 57.4
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1211.4 1013 61.4
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1210.3 1063 58.7
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1209.1 1090 57.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1205.7 1101 57.5
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1204.1 1099 57.6
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 1101 57.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 1039 58.7
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1189.5 1050 58.6
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1185.2 1003 59.4
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1184.5 1035 58.5
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1183.7 1064 57.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1179.9 1124 54.8
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1174.8 1108 55.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1174.1 1096 56.0
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1172.9 1046 58.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1166.0 1105 55.7
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1165.6 1069 54.9
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1164.8 1092 55.0
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1163.3 1047 58.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1162.5 1152 53.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1160.2 993 60.1
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1157.1 1026 57.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1152.9 1079 55.5
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1151.3 1027 57.1
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1148.7 1124 53.8
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1148.7 1200 51.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1145.6 1142 53.6
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1144.8 1025 57.1
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1144.4 1026 57.2
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1143.6 1043 56.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1142.1 1041 56.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1141.3 1025 57.1
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1140.2 1000 56.5
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1138.6 1060 55.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1134.8 1026 57.0
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1132.5 1026 56.9
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 0.0e+00 1132.1 1137 53.9
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1131.7 1051 55.9
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1129.8 1069 55.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1129.0 1013 57.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1127.5 996 57.7
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1126.3 1098 54.1
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1123.2 1094 55.1
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1122.5 1082 54.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1121.7 1033 54.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1120.1 1036 54.9
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1119.0 1104 53.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1117.4 1045 54.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1117.4 1041 55.8
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1115.1 1034 55.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1113.2 1179 50.6
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1110.5 1073 54.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1110.1 1070 54.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1109.7 1107 54.4
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1108.2 1096 53.0
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1107.8 1043 54.8
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1107.4 1104 52.7
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1106.7 1006 54.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1104.4 1031 55.7
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1103.2 1001 55.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1103.2 1068 53.7
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1102.8 1054 54.6
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1102.0 1049 53.8
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1101.7 999 56.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1101.3 1055 54.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1100.5 1053 54.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1100.1 1054 54.5
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1094.0 1010 56.0
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1093.2 1090 54.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1093.2 1065 54.0
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1088.2 1029 54.2
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1080.9 1032 54.0
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 0.0e+00 1075.5 962 56.0
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 8.9e-312 1074.3 1050 52.7
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.0e-309 1066.2 1109 52.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.6e-306 1056.6 1049 53.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 2.7e-306 1055.8 975 55.5
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.3e-305 1053.5 1175 51.1
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.7e-305 1053.1 1202 49.8
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 2.5e-304 1049.3 1024 53.1
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 3.2e-304 1048.9 927 57.6
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 1.6e-303 1046.6 1023 53.8
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 8.0e-303 1044.3 1003 54.5
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 5.2e-294 1015.0 1075 50.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 5.4e-291 1005.0 899 57.0
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.3e-286 989.6 1125 50.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 4.6e-282 975.3 1029 50.4
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.1e-278 962.6 861 57.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 3.3e-272 942.6 817 58.8
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.9e-265 919.1 775 60.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.3e-255 887.5 675 65.8
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.9e-251 873.6 960 48.9
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 5.8e-245 852.0 1091 43.9
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.7e-234 816.6 788 55.5
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 4.5e-229 799.3 1207 41.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 7.7e-189 665.6 676 52.7
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.8e-185 654.4 487 66.7
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.8e-185 654.4 487 66.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.6e-163 579.7 581 51.3
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.1e-129 469.2 374 63.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.9e-78 298.9 452 40.0
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 4.1e-57 228.0 582 29.2
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.0e-52 211.5 201 53.7
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.6e-45 188.3 143 63.6
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 6.8e-44 184.1 171 55.0
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.9e-41 176.0 406 33.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.1e-39 167.9 623 24.9
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 6.6e-39 167.5 170 52.9
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.9e-38 166.0 143 55.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-36 159.5 202 40.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.6e-27 129.0 174 44.3
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.2e-26 125.9 188 39.9
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 4.3e-22 111.7 170 39.4
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.8e-21 108.2 106 53.8
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.7e-13 82.0 293 23.2
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.8e-12 79.7 102 39.2
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 7.6e-11 74.3 74 58.1
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 6.4e-10 71.2 68 50.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.0e-08 64.7 107 37.4
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.3e-07 63.5 82 45.1
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.3e-06 58.9 39 64.1


User provided reference genes

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