Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.0e-291 1003.4 497 100.0
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 3.6e-147 525.8 458 55.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 6.2e-147 525.0 458 56.1
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 1.4e-146 523.9 458 55.2
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 2.4e-146 523.1 458 55.2
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 4.0e-146 522.3 458 55.0
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 5.3e-146 521.9 458 55.5
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 1.2e-145 520.8 458 55.2
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 3.4e-145 519.2 460 56.1
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 1.3e-144 517.3 458 55.7
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 1.7e-144 516.9 458 55.9
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 3.8e-144 515.8 458 55.2
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 3.8e-144 515.8 458 55.5
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.1e-143 514.2 458 54.8
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 1.9e-143 513.5 458 54.1
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 4.2e-143 512.3 458 55.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 4.2e-143 512.3 458 55.2
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 1.6e-142 510.4 458 55.5
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.6e-142 510.4 458 55.2
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 3.5e-142 509.2 457 55.1
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.6e-142 508.8 458 53.9
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 1.3e-141 507.3 458 54.4
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 1.3e-141 507.3 458 53.9
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 2.3e-141 506.5 458 54.8
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 3.0e-141 506.1 458 54.8
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 3.0e-141 506.1 458 53.7
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 5.1e-141 505.4 458 53.7
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 6.6e-141 505.0 463 54.2
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 8.7e-141 504.6 458 54.6
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 1.1e-140 504.2 457 53.8
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 1.5e-140 503.8 456 54.4
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 1.5e-140 503.8 457 54.5
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 5.6e-140 501.9 458 53.7
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 5.6e-140 501.9 458 53.7
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 7.4e-140 501.5 458 54.1
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 7.4e-140 501.5 458 55.0
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 9.6e-140 501.1 458 54.6
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 1.6e-139 500.4 458 52.8
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.6e-139 500.4 458 54.6
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 2.8e-139 499.6 460 53.3
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 2.8e-139 499.6 457 54.5
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.8e-139 499.6 458 54.1
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 4.8e-139 498.8 458 53.3
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 8.1e-139 498.0 458 53.7
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 1.4e-138 497.3 458 54.1
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 1.4e-138 497.3 458 53.5
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 1.8e-138 496.9 457 54.0
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 2.4e-138 496.5 459 54.9
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 4.0e-138 495.7 459 54.5
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 4.0e-138 495.7 459 54.5
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 4.0e-138 495.7 459 54.5
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 5.3e-138 495.4 458 53.9
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-137 494.2 456 53.1
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 1.2e-137 494.2 459 54.5
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 1.2e-137 494.2 459 54.5
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 2.0e-137 493.4 459 54.9
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 5.8e-137 491.9 459 54.5
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.8e-137 491.9 460 53.5
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 9.9e-137 491.1 458 53.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 1.3e-136 490.7 459 54.0
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 1.7e-136 490.3 460 52.4
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 2.2e-136 490.0 459 54.7
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 2.2e-136 490.0 458 53.5
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 2.2e-136 490.0 458 52.6
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 2.9e-136 489.6 459 53.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 6.4e-136 488.4 459 54.2
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 6.4e-136 488.4 458 53.1
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 1.1e-135 487.6 459 53.6
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 2.4e-135 486.5 458 53.1
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 3.2e-135 486.1 458 53.5
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 5.5e-135 485.3 458 52.6
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 7.1e-135 485.0 459 51.9
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 7.1e-135 485.0 459 53.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 1.6e-134 483.8 459 51.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 1.6e-134 483.8 458 52.6
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 1.6e-134 483.8 458 52.4
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 2.7e-134 483.0 463 52.5
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 2.7e-134 483.0 458 52.2
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 4.6e-134 482.3 457 52.1
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 6.0e-134 481.9 449 53.0
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 1.0e-133 481.1 457 52.5
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 1.3e-133 480.7 459 52.5
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.8e-133 480.3 456 51.5
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 1.8e-133 480.3 458 52.4
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 8.7e-133 478.0 458 52.6
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 1.1e-132 477.6 458 52.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 2.5e-132 476.5 458 52.0
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 1.3e-131 474.2 458 52.4
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 1.8e-130 470.3 458 51.5
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 9.0e-130 468.0 458 51.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 1.0e-128 464.5 458 51.1
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 9.3e-127 458.0 458 51.1
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 6.0e-126 455.3 451 50.3
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 1.0e-125 454.5 458 50.9
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 1.3e-125 454.1 459 50.3
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 5.1e-125 452.2 450 50.0
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 5.1e-125 452.2 456 50.7
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 6.9e-122 441.8 460 48.5
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 2.0e-121 440.3 466 49.1
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 3.4e-121 439.5 460 48.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 6.5e-120 435.3 429 51.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.9e-119 433.7 458 48.5
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 1.2e-118 431.0 455 48.4
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 4.1e-114 416.0 459 47.9
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.5e-113 414.1 402 52.0
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.0e-112 411.4 403 52.6
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 6.9e-106 388.7 450 45.3
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 2.5e-103 380.2 450 45.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 4.4e-100 369.4 466 42.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 4.8e-99 365.9 492 42.3
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 9.4e-95 351.7 456 41.2
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 1.2e-89 334.7 456 41.0
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.2e-84 318.2 449 39.6
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.0e-80 302.8 456 37.7
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 1.2e-78 298.1 308 49.4
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.2e-77 292.7 474 36.1
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.1e-71 275.0 411 39.7
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 5.6e-55 219.5 226 53.1
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 6.8e-53 212.6 426 32.9
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.7e-43 181.4 175 55.4
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.4e-42 178.3 313 34.8
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 6.6e-32 142.9 145 49.0
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 5.6e-15 86.7 55 72.7
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 5.8e-12 76.6 71 45.1
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-09 68.6 65 49.2
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 1.5e-07 62.0 46 58.7


User provided reference genes

Program Settings