Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 3.9e-46 188.0 108 100.0
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 5.3e-11 71.2 65 55.4
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 7.0e-11 70.9 60 53.3
Cfa007370 Carpinus fangiana HOM05D002383 ORTHO05D002515 2.6e-10 68.9 56 57.1
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 2.6e-10 68.9 56 55.4
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 2.6e-10 68.9 56 58.9
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 3.5e-10 68.6 54 61.1
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 3.5e-10 68.6 73 50.7
TAR374G1253 Trochodendron aralioides HOM05D002383 ORTHO05D002515 4.5e-10 68.2 61 59.0
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 5.9e-10 67.8 59 54.2
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 5.9e-10 67.8 56 57.1
QL02p074739 Quercus lobata HOM05D002383 ORTHO05D002515 5.9e-10 67.8 85 45.9
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 5.9e-10 67.8 73 50.7
Haze_14738 Corylus avellana HOM05D002383 ORTHO05D002515 7.7e-10 67.4 56 55.4
TAR633G2295 Trochodendron aralioides HOM05D002383 ORTHO05D016259 7.7e-10 67.4 58 56.9
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 1.7e-09 66.2 56 55.4
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 1.7e-09 66.2 71 47.9
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 2.2e-09 65.9 56 58.9
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.9e-09 65.5 54 55.6
Hma1.2p1_2120F.1_g314410 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 3.8e-09 65.1 71 49.3
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 5.0e-09 64.7 73 50.7
CAN.G1057.2 Capsicum annuum HOM05D002383 ORTHO05D002515 8.5e-09 63.9 56 53.6
ATR1154G029 Amborella trichopoda HOM05D002383 ORTHO05D002515 1.1e-08 63.5 54 53.7
CDE07G1210 Ceratophyllum demersum HOM05D002383 ORTHO05D002515 1.1e-08 63.5 65 52.3
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.1e-08 63.5 57 54.4
Hma1.2p1_0160F.1_g071240 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 1.1e-08 63.5 53 56.6
Rhsim08G0050700 Rhododendron simsii HOM05D002383 ORTHO05D002515 1.1e-08 63.5 56 57.1
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 1.1e-08 63.5 60 56.7
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 1.5e-08 63.2 51 58.8
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 1.5e-08 63.2 50 60.0
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 1.9e-08 62.8 57 54.4
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 2.5e-08 62.4 59 54.2
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 2.5e-08 62.4 56 55.4
MBI18_g03850_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 2.5e-08 62.4 58 55.2
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 2.5e-08 62.4 67 47.8
Oeu018138.1 Olea europaea HOM05D002383 ORTHO05D002515 2.5e-08 62.4 72 48.6
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.2e-08 62.0 54 53.7
Glyma.19G005400 Glycine max HOM05D002383 ORTHO05D002515 3.2e-08 62.0 54 59.3
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 3.2e-08 62.0 55 50.9
PGSC0003DMG400006915 Solanum tuberosum HOM05D002383 ORTHO05D002515 3.2e-08 62.0 71 46.5
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 3.2e-08 62.0 72 45.8
CDE02G0594 Ceratophyllum demersum HOM05D000029 ORTHO05D002494 4.2e-08 61.6 65 50.8
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.2e-08 61.6 54 53.7
Phvul.004G010700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 4.2e-08 61.6 73 45.2
Prupe.3G291500 Prunus persica HOM05D002383 ORTHO05D002515 4.2e-08 61.6 67 46.3
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 4.2e-08 61.6 54 53.7
Actinidia05994 Actinidia chinensis HOM05D002383 ORTHO05D002515 5.5e-08 61.2 74 44.6
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 5.5e-08 61.2 54 46.3
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 5.5e-08 61.2 54 46.3
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 5.5e-08 61.2 55 50.9
BcaNung05346 Brassica carinata HOM05D002383 ORTHO05D002515 7.2e-08 60.8 71 42.3
BcaNung05347 Brassica carinata HOM05D002383 ORTHO05D002515 7.2e-08 60.8 71 42.3
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 7.2e-08 60.8 85 41.2
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 7.2e-08 60.8 53 49.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 7.2e-08 60.8 85 40.0
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 9.4e-08 60.5 53 50.9
CSS0034273 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 9.4e-08 60.5 55 50.9
Duzib248G0824 Durio zibethinus HOM05D002383 ORTHO05D002515 9.4e-08 60.5 69 44.9
Gohir.A09G029100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 9.4e-08 60.5 56 53.6
PSO478G3770 Papaver somniferum HOM05D002383 ORTHO05D002515 9.4e-08 60.5 74 45.9
Solyc02g067810.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 9.4e-08 60.5 74 45.9
Sopen02g016920 Solanum pennellii HOM05D002383 ORTHO05D002515 9.4e-08 60.5 74 45.9
Atru.chr6.2391 Acer truncatum HOM05D002383 ORTHO05D002515 1.2e-07 60.1 50 52.0
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 1.2e-07 60.1 53 54.7
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.2e-07 60.1 63 44.4
MBI16_g23839_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 1.2e-07 60.1 56 48.2
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.6e-07 59.7 80 42.5
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 1.6e-07 59.7 59 50.8
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.6e-07 59.7 58 51.7
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 2.1e-07 59.3 58 43.1
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 2.1e-07 59.3 54 51.9
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.1e-07 59.3 54 51.9
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.1e-07 59.3 56 53.6
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 2.1e-07 59.3 56 53.6
TAR622G1076 Trochodendron aralioides HOM05D002383 ORTHO05D002515 2.1e-07 59.3 70 50.0
BraA09t37356Z Brassica rapa HOM05D002383 ORTHO05D002515 2.7e-07 58.9 80 41.2
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 2.7e-07 58.9 58 43.1
Migut.H00078 Erythranthe guttata HOM05D002383 ORTHO05D002515 2.7e-07 58.9 67 46.3
Oeu054622.1 Olea europaea HOM05D002383 ORTHO05D002515 2.7e-07 58.9 56 51.8
Sopen02g031160 Solanum pennellii HOM05D002383 ORTHO05D002515 2.7e-07 58.9 73 41.1
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.6e-07 58.5 74 41.9
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 3.6e-07 58.5 53 47.2
Psat1g054720 Pisum sativum HOM05D002383 ORTHO05D002515 3.6e-07 58.5 77 42.9
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 4.7e-07 58.2 55 58.2
FAN05G3597 Fragaria x ananassa HOM05D002383 ORTHO05D002515 4.7e-07 58.2 55 49.1
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 4.7e-07 58.2 52 50.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.7e-07 58.2 64 45.3
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.7e-07 58.2 64 48.4
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 6.1e-07 57.8 72 44.4
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 6.1e-07 57.8 53 56.6
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 6.1e-07 57.8 53 56.6
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 6.1e-07 57.8 53 56.6
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 6.1e-07 57.8 53 56.6
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 6.1e-07 57.8 53 56.6
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 6.1e-07 57.8 54 55.6
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 6.1e-07 57.8 68 48.5
Oeu030979.1 Olea europaea HOM05D002383 ORTHO05D002515 6.1e-07 57.8 54 55.6
SalBow2G2844 Salvia bowleyana HOM05D002383 ORTHO05D002515 6.1e-07 57.8 50 54.0
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 6.1e-07 57.8 50 56.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.1e-07 57.8 50 56.0
VMungo0464G1703 Vigna mungo HOM05D002383 ORTHO05D002515 6.1e-07 57.8 73 45.2
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 8.0e-07 57.4 54 44.4
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 8.0e-07 57.4 76 47.4
Oeu014151.1 Olea europaea HOM05D002383 ORTHO05D002515 8.0e-07 57.4 68 44.1
Oeu056716.1 Olea europaea HOM05D002383 ORTHO05D002515 8.0e-07 57.4 64 43.8
Peaxi162Scf00080g00104 Petunia axillaris HOM05D002383 ORTHO05D002515 8.0e-07 57.4 52 53.8
RcHm_v2.0_Chr2g0172811 Rosa chinensis HOM05D002383 ORTHO05D002515 8.0e-07 57.4 55 49.1
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 8.0e-07 57.4 72 47.2
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 8.0e-07 57.4 92 44.6
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 8.0e-07 57.4 51 47.1
FvH4_6g51230 Fragaria vesca HOM05D002383 ORTHO05D002515 1.0e-06 57.0 55 49.1
FAN02G4557 Fragaria x ananassa HOM05D002383 ORTHO05D002515 1.0e-06 57.0 55 49.1
FAN14G3744 Fragaria x ananassa HOM05D002383 ORTHO05D002515 1.0e-06 57.0 55 49.1
Lj2g0006785 Lotus japonicus HOM05D002383 ORTHO05D002515 1.0e-06 57.0 72 43.1
Lalb_Chr06g0175741 Lupinus albus HOM05D002383 ORTHO05D002515 1.0e-06 57.0 59 47.5
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 1.0e-06 57.0 55 49.1
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.0e-06 57.0 63 47.6
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 1.0e-06 57.0 62 45.2
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 1.4e-06 56.6 62 43.5
CAN.G473.10 Capsicum annuum HOM05D002383 ORTHO05D002515 1.4e-06 56.6 52 50.0
Oeu036541.1 Olea europaea HOM05D002383 ORTHO05D002515 1.4e-06 56.6 56 51.8
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.4e-06 56.6 81 45.7
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.4e-06 56.6 71 47.9
PGSC0003DMG400012600 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.4e-06 56.6 80 40.0
AL7G49370 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 1.8e-06 56.2 66 47.0
Solyc02g086450.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 1.8e-06 56.2 73 39.7
A09p17240 Brassica napus HOM05D002383 ORTHO05D002515 2.3e-06 55.8 59 44.1
C09p21300 Brassica napus HOM05D002383 ORTHO05D002515 2.3e-06 55.8 71 39.4
Lsat_1_v5_gn_0_39801 Lactuca sativa HOM05D002383 ORTHO05D002515 2.3e-06 55.8 49 53.1
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.3e-06 55.8 71 45.1
PSO017G4221 Papaver somniferum HOM05D002383 ORTHO05D002515 2.3e-06 55.8 55 50.9
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 2.3e-06 55.8 76 43.4
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 3.0e-06 55.5 53 54.7
CARHR051790 Cardamine hirsuta HOM05D002383 ORTHO05D002515 3.0e-06 55.5 62 43.5
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 3.0e-06 55.5 72 47.2
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.0e-06 55.5 52 44.2
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.0e-06 55.5 57 49.1
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 3.0e-06 55.5 50 52.0
TPR.G14081 Trifolium pratense HOM05D002383 ORTHO05D002515 3.0e-06 55.5 68 44.1
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 4.0e-06 55.1 62 40.3
BolC9t55044H Brassica oleracea HOM05D002383 ORTHO05D002515 4.0e-06 55.1 71 39.4
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 4.0e-06 55.1 55 47.3
Migut.E00196 Erythranthe guttata HOM05D002383 ORTHO05D002515 4.0e-06 55.1 53 56.6
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 4.0e-06 55.1 69 43.5
Oeu001712.1 Olea europaea HOM05D002383 ORTHO05D002515 4.0e-06 55.1 53 47.2
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 5.2e-06 54.7 62 40.3
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 5.2e-06 54.7 62 40.3
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 5.2e-06 54.7 73 42.5
DCAR_021721 Daucus carota HOM05D002383 ORTHO05D002515 5.2e-06 54.7 59 45.8
Eucgr.J02239 Eucalyptus grandis HOM05D002383 ORTHO05D002515 5.2e-06 54.7 52 55.8
Lalb_Chr02g0160501 Lupinus albus HOM05D002383 ORTHO05D002515 5.2e-06 54.7 61 52.5
Mapoly0019s0178 Marchantia polymorpha HOM05D011262 ORTHO05D012767 5.2e-06 54.7 81 43.2
Medtr6g005250 Medicago truncatula HOM05D002383 ORTHO05D002515 5.2e-06 54.7 75 40.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 5.2e-06 54.7 59 50.8
Pp3c23_21800 Physcomitrium patens HOM05D011262 ORTHO05D012767 5.2e-06 54.7 74 41.9
MSTRG.570 Avicennia marina HOM05D002383 ORTHO05D002515 6.7e-06 54.3 54 50.0
MSTRG.7920 Avicennia marina HOM05D002383 ORTHO05D002515 6.7e-06 54.3 56 50.0
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 6.7e-06 54.3 71 43.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 6.7e-06 54.3 51 52.9
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 6.7e-06 54.3 55 47.3
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 6.7e-06 54.3 50 52.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 6.7e-06 54.3 65 44.6
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 6.7e-06 54.3 53 52.8
Sopen09g005700 Solanum pennellii HOM05D019299 ORTHO05D025949 6.7e-06 54.3 57 45.6
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.7e-06 54.3 72 41.7
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 8.8e-06 53.9 75 44.0
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 8.8e-06 53.9 72 37.5
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 8.8e-06 53.9 53 52.8
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 8.8e-06 53.9 53 47.2
Gohir.D10G086500 Gossypium hirsutum HOM05D002383 ORTHO05D002515 8.8e-06 53.9 50 46.0
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 8.8e-06 53.9 57 45.6
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 8.8e-06 53.9 73 39.7
Nitab4.5_0003318g0160 Nicotiana tabacum HOM05D002383 ORTHO05D002515 8.8e-06 53.9 53 49.1
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 8.8e-06 53.9 53 43.4
Solyc09g010980.1 Solanum lycopersicum HOM05D019299 ORTHO05D025949 8.8e-06 53.9 57 45.6
SGA_v2.0_scaffold135G34905 Striga asiatica HOM05D002383 ORTHO05D002515 8.8e-06 53.9 59 47.5


User provided reference genes

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