Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.9e-68 262.3 128 100.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 6.7e-37 157.5 93 77.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.4e-36 154.1 93 74.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 7.4e-36 154.1 93 74.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 7.4e-36 154.1 93 74.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 7.4e-36 154.1 93 74.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 9.7e-36 153.7 110 65.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.7e-36 153.7 93 74.2
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.8e-35 152.1 93 73.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.8e-35 152.1 93 72.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.7e-35 151.8 95 73.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 6.3e-35 151.0 97 70.1
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 6.3e-35 151.0 93 73.1
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 6.3e-35 151.0 93 73.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 8.2e-35 150.6 98 69.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 8.2e-35 150.6 104 66.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.1e-34 148.3 107 66.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.9e-34 147.5 115 60.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.9e-34 147.5 115 60.9
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.9e-34 147.5 112 62.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 6.9e-34 147.5 94 71.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.9e-34 147.5 93 72.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.1e-34 147.1 98 68.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-33 146.7 96 69.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.2e-33 146.7 107 66.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.5e-33 146.4 93 72.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.0e-33 146.0 93 69.9
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-33 146.0 112 59.8
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.0e-33 146.0 111 63.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.4e-33 145.2 101 67.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.4e-33 145.2 95 70.5
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.4e-33 145.2 93 69.9
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 7.7e-33 144.1 93 69.9
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 7.7e-33 144.1 102 64.7
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 7.7e-33 144.1 97 68.0
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 7.7e-33 144.1 93 72.0
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.0e-32 143.7 97 69.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.3e-32 143.3 94 68.1
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.7e-32 142.9 103 67.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.7e-32 142.9 93 71.0
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.7e-32 142.9 95 68.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.7e-32 142.9 93 68.8
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.2e-32 142.5 93 72.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.2e-32 142.5 98 67.3
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.2e-32 142.5 93 67.7
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.9e-32 142.1 109 60.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.0e-32 141.4 93 69.9
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.0e-32 141.4 91 70.3
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 5.0e-32 141.4 93 67.7
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 5.0e-32 141.4 98 67.3
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 5.0e-32 141.4 104 64.4
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 6.5e-32 141.0 93 69.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 8.5e-32 140.6 103 68.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-32 140.6 111 59.5
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-32 140.6 111 59.5
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.1e-31 140.2 93 67.7
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.1e-31 140.2 93 69.9
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.1e-31 140.2 103 67.0
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.1e-31 140.2 110 60.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-31 140.2 105 61.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-31 140.2 94 67.0
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.4e-31 139.8 111 62.2
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.5e-31 139.0 101 64.4
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.5e-31 139.0 93 71.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.2e-31 138.7 107 63.6
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-31 138.7 93 67.7
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-31 138.7 93 67.7
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.2e-31 138.7 93 67.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 3.2e-31 138.7 94 64.9
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 3.2e-31 138.7 93 65.6
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 4.2e-31 138.3 99 67.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.2e-31 138.3 101 64.4
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 4.2e-31 138.3 93 69.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 4.2e-31 138.3 100 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 5.5e-31 137.9 94 68.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 5.5e-31 137.9 96 66.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.5e-31 137.9 102 61.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 7.2e-31 137.5 93 66.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 7.2e-31 137.5 93 68.8
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 7.2e-31 137.5 94 66.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.2e-31 137.5 94 66.0
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.2e-31 137.5 94 66.0
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 9.4e-31 137.1 104 63.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 9.4e-31 137.1 101 63.4
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 9.4e-31 137.1 94 64.9
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.2e-30 136.7 94 67.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.2e-30 136.7 100 64.0
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.2e-30 136.7 94 66.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.6e-30 136.3 93 67.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.6e-30 136.3 93 63.4
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.1e-30 136.0 93 67.7
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.7e-30 135.6 94 62.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.7e-30 135.6 113 60.2
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 2.7e-30 135.6 89 68.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 3.6e-30 135.2 94 69.1
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-30 135.2 93 67.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-30 135.2 105 63.8
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.6e-30 135.2 105 63.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.6e-30 135.2 94 69.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.7e-30 134.8 93 66.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 4.7e-30 134.8 98 60.2
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.1e-30 134.4 93 67.7
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 7.9e-30 134.0 93 67.7
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.9e-30 134.0 93 66.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.0e-29 133.7 106 63.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.0e-29 133.7 94 67.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.0e-29 133.7 94 64.9
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.4e-29 133.3 105 62.9
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.4e-29 133.3 105 62.9
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.4e-29 133.3 91 68.1
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.4e-29 133.3 94 67.0
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.8e-29 132.9 97 63.9
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-29 132.9 93 63.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.3e-29 132.5 93 65.6
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.3e-29 132.5 93 65.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.0e-29 132.1 95 66.3
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 3.0e-29 132.1 93 66.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.0e-29 132.1 93 65.6
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.9e-29 131.7 96 65.6
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 3.9e-29 131.7 93 66.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.9e-29 131.7 102 59.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.9e-29 131.7 65 93.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 5.1e-29 131.3 93 62.4
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.7e-29 131.0 95 63.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-28 130.2 97 63.9
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-28 130.2 97 63.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.5e-28 129.8 91 65.9
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.6e-28 129.0 93 63.4
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.6e-28 129.0 101 60.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.2e-27 125.9 100 60.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 4.8e-27 124.8 101 59.4
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 8.2e-27 124.0 93 63.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.1e-26 122.1 92 60.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-25 120.2 107 57.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.5e-25 118.6 91 60.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 5.0e-24 114.8 105 57.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-23 113.6 93 60.2
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 4.2e-23 111.7 131 46.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-22 109.8 105 54.3
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-22 109.8 97 54.6
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.7e-22 108.2 65 78.5
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.0e-22 107.5 94 55.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.5e-20 103.2 73 64.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-19 99.8 65 70.8
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.7e-19 99.8 78 61.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.4e-18 96.7 62 74.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 5.3e-18 94.7 102 48.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.2e-17 93.6 67 68.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-17 92.8 69 63.8
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-17 92.0 64 70.3
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.0e-10 67.8 62 50.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-09 67.0 61 52.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-07 59.3 41 65.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-06 56.2 65 50.8
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.0e-06 54.3 39 66.7


User provided reference genes

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