Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.3e-249 863.6 424 100.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.3e-65 254.6 490 36.3
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.4e-60 235.3 488 34.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.6e-57 225.7 412 35.7
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.1e-55 220.7 413 38.0
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.4e-54 218.0 413 38.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 3.1e-54 216.9 411 37.2
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 5.3e-54 216.1 401 36.4
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 2.0e-53 214.2 393 38.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-53 214.2 381 36.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.0e-53 214.2 390 37.7
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-52 211.1 383 35.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.7e-52 211.1 388 36.9
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.2e-52 210.7 383 35.8
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.2e-52 210.7 387 37.7
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.9e-52 210.3 442 35.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.9e-52 209.5 390 36.9
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 6.4e-52 209.1 393 37.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 6.4e-52 209.1 424 36.8
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 8.4e-52 208.8 392 37.0
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.4e-52 208.8 470 35.5
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.1e-51 208.4 388 36.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-51 208.0 390 36.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-51 208.0 390 37.2
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.9e-51 207.6 384 37.2
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.9e-51 207.6 390 36.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.9e-51 207.6 408 37.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.4e-51 207.2 390 36.9
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.2e-51 206.5 383 37.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 5.4e-51 206.1 390 36.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 5.4e-51 206.1 393 36.4
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.2e-50 204.9 466 33.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.6e-50 204.5 386 36.8
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.1e-50 204.1 391 36.3
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.5e-50 203.4 413 35.4
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 4.6e-50 203.0 463 34.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 6.0e-50 202.6 459 33.8
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.0e-50 202.6 383 36.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 7.9e-50 202.2 388 37.1
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.0e-49 201.8 389 35.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.8e-49 201.1 384 36.7
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.8e-49 201.1 405 35.1
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.3e-49 200.7 390 37.2
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.3e-49 200.7 390 37.2
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.0e-49 200.3 384 37.0
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.0e-49 200.3 389 36.5
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 3.9e-49 199.9 382 37.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.9e-49 199.9 473 34.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.9e-49 199.9 390 35.1
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 3.9e-49 199.9 387 35.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.1e-49 199.5 471 33.8
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 6.7e-49 199.1 453 32.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 8.7e-49 198.7 350 38.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-48 198.4 381 34.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.5e-48 198.0 448 34.6
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.5e-48 198.0 389 36.8
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 4.3e-48 196.4 480 34.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 5.6e-48 196.1 394 35.0
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 5.6e-48 196.1 381 36.0
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 7.4e-48 195.7 468 32.5
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 7.4e-48 195.7 409 35.2
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 9.6e-48 195.3 380 36.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.6e-47 194.5 348 37.4
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.6e-47 194.5 384 36.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 2.1e-47 194.1 383 37.1
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.1e-47 194.1 344 36.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.8e-47 193.7 345 37.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.8e-47 193.7 384 35.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.7e-47 193.4 381 36.2
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 6.2e-47 192.6 361 38.2
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 8.1e-47 192.2 395 33.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-46 191.8 462 32.3
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.1e-46 191.8 445 33.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.1e-46 191.8 399 34.6
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.4e-46 191.4 408 35.3
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.8e-46 191.0 480 32.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.8e-46 191.0 391 36.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.4e-46 190.7 317 39.1
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.1e-46 190.3 402 36.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 4.0e-46 189.9 484 32.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 4.0e-46 189.9 395 33.4
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.3e-46 189.5 429 35.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 5.3e-46 189.5 457 33.7
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 5.3e-46 189.5 477 34.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 6.9e-46 189.1 460 33.5
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.2e-45 188.3 369 34.7
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.5e-45 188.0 402 33.8
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.0e-45 187.6 397 35.0
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.0e-45 187.6 472 31.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 2.0e-45 187.6 493 31.2
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.0e-45 187.6 357 35.6
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.6e-45 187.2 435 33.8
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.8e-45 186.0 443 35.4
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 5.8e-45 186.0 481 30.6
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 7.6e-45 185.7 362 35.9
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.6e-45 185.7 357 35.3
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-44 184.9 362 35.6
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.9e-44 183.7 414 32.9
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 2.9e-44 183.7 460 35.9
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.8e-44 183.3 410 32.9
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 8.4e-44 182.2 349 34.1
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 4.2e-43 179.9 346 37.0
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 7.1e-43 179.1 385 35.3
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 9.3e-43 178.7 463 32.8
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.2e-42 178.3 395 33.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.7e-42 177.2 416 32.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.3e-41 174.9 374 34.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.8e-41 174.5 339 36.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.7e-41 172.6 391 33.0
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 8.7e-41 172.2 334 35.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.5e-40 170.6 416 31.2
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 5.6e-40 169.5 346 35.8
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.6e-39 167.9 416 31.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.1e-39 167.5 353 36.3
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.1e-39 167.5 467 30.4
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.2e-39 166.0 432 30.8
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.1e-38 165.2 404 31.9
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.4e-38 164.9 365 34.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.8e-38 164.5 464 31.9
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 3.1e-38 163.7 389 32.4
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.1e-38 163.7 411 31.1
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 9.0e-38 162.2 411 30.9
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 3.4e-37 160.2 346 33.2
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-36 158.3 374 34.5
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.9e-36 157.1 336 33.0
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.9e-36 156.4 407 31.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.9e-36 156.4 384 32.8
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 8.4e-36 155.6 366 32.2
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 8.4e-36 155.6 388 30.9
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.1e-34 151.0 384 31.5
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.5e-34 150.2 385 30.6
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.6e-34 149.8 363 31.4
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.7e-32 142.9 284 35.2
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.8e-30 137.9 187 43.3
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.4e-30 137.5 336 32.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.5e-29 134.8 310 33.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 4.5e-29 133.3 193 40.9
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 3.0e-25 120.6 202 37.1
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 7.4e-24 115.9 156 41.0
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 4.5e-21 106.7 163 38.0
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 7.7e-21 105.9 267 30.3
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-20 104.4 139 41.0
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-20 104.4 139 41.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.8e-20 103.6 155 36.1
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 5.0e-20 103.2 155 36.1
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 8.5e-20 102.4 158 38.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.4e-19 101.7 109 43.1
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.3e-15 88.6 225 33.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 7.0e-14 82.8 102 45.1
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 9.1e-14 82.4 82 45.1
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.9e-13 79.7 263 30.4
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 3.8e-12 77.0 147 30.6
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.0e-10 69.3 115 34.8
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-08 65.5 245 28.2
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-08 65.5 245 28.2


User provided reference genes

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