Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 4.1e-223 777.7 379 100.0
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 9.2e-26 122.1 156 40.4
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.7e-24 117.9 157 39.5
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 3.9e-24 116.7 156 41.0
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 3.9e-24 116.7 158 36.1
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 6.6e-24 115.9 155 39.4
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.9e-23 114.4 164 37.2
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 4.3e-23 113.2 154 37.7
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 4.3e-23 113.2 156 38.5
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 4.3e-23 113.2 157 39.5
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 5.6e-23 112.8 156 37.2
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 7.3e-23 112.5 160 36.2
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 7.3e-23 112.5 157 39.5
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 7.3e-23 112.5 156 37.8
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 1.2e-22 111.7 157 36.9
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.6e-22 111.3 157 38.9
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.6e-22 111.3 157 38.9
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.6e-22 111.3 156 37.2
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.1e-22 110.9 157 36.9
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.1e-22 110.9 155 37.4
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 4.7e-22 109.8 156 37.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 4.7e-22 109.8 156 38.5
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 4.7e-22 109.8 160 31.2
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 6.2e-22 109.4 166 36.1
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 8.1e-22 109.0 158 36.7
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 8.1e-22 109.0 196 31.1
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 8.1e-22 109.0 157 37.6
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 8.1e-22 109.0 187 31.6
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.1e-21 108.6 165 33.9
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.1e-21 108.6 164 32.3
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 1.4e-21 108.2 156 39.1
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.8e-21 107.8 156 35.9
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.8e-21 107.8 164 35.4
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 1.8e-21 107.8 185 34.1
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.8e-21 107.8 160 33.8
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.4e-21 107.5 154 36.4
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 2.4e-21 107.5 156 35.9
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.1e-21 107.1 155 37.4
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 4.0e-21 106.7 188 34.0
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.0e-21 106.7 156 34.6
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.0e-21 106.7 156 35.9
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 5.3e-21 106.3 156 35.9
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.3e-21 106.3 188 33.5
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.9e-21 105.9 161 36.0
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 6.9e-21 105.9 157 35.7
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 6.9e-21 105.9 157 34.4
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 9.0e-21 105.5 155 36.1
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.2e-20 105.1 158 34.8
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.0e-20 104.4 184 33.7
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 2.0e-20 104.4 158 34.8
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.6e-20 104.0 163 32.5
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 2.6e-20 104.0 156 35.3
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 3.4e-20 103.6 156 35.3
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 3.4e-20 103.6 163 36.2
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.4e-20 103.2 158 37.3
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 4.4e-20 103.2 156 37.8
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.8e-20 102.8 155 34.8
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 5.8e-20 102.8 155 34.8
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 9.9e-20 102.1 155 34.2
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 1.3e-19 101.7 154 35.7
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 1.7e-19 101.3 154 34.4
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.7e-19 101.3 184 33.2
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.7e-19 101.3 157 34.4
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.2e-19 100.9 154 37.0
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 6.4e-19 99.4 159 33.3
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 6.4e-19 99.4 141 36.9
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 8.4e-19 99.0 157 34.4
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.1e-18 98.6 157 32.5
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.1e-18 98.6 155 34.2
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-18 97.8 166 35.5
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 1.9e-18 97.8 166 32.5
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.9e-18 97.8 156 34.6
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.4e-18 97.4 155 34.2
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 2.4e-18 97.4 155 34.2
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 3.2e-18 97.1 154 33.8
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.2e-18 96.7 155 34.2
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 5.4e-18 96.3 154 35.7
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 5.4e-18 96.3 171 31.0
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 7.1e-18 95.9 154 34.4
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.1e-18 95.9 192 31.2
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 9.3e-18 95.5 174 34.5
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.2e-17 95.1 156 35.9
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.2e-17 95.1 173 34.7
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.6e-17 94.7 156 32.1
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 2.1e-17 94.4 158 33.5
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-17 94.4 157 29.9
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 2.1e-17 94.4 163 35.0
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 2.7e-17 94.0 154 31.8
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 2.7e-17 94.0 188 31.9
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.5e-17 93.6 158 31.6
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.0e-16 92.0 164 32.3
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.3e-16 90.9 157 31.8
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.3e-16 90.9 156 32.7
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-16 90.9 149 33.6
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.3e-16 90.9 162 30.9
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.3e-16 90.9 162 30.9
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.0e-16 90.5 163 35.0
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.0e-16 90.5 164 34.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.9e-16 90.1 205 29.8
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 5.1e-16 89.7 164 33.5
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 5.1e-16 89.7 157 35.7
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 6.6e-16 89.4 163 33.1
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 6.6e-16 89.4 165 34.5
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.6e-16 89.4 165 32.7
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 8.7e-16 89.0 163 32.5
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 8.7e-16 89.0 197 29.4
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.7e-16 89.0 197 29.4
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 1.5e-15 88.2 160 33.8
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 1.5e-15 88.2 160 33.8
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.5e-15 88.2 155 34.2
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.9e-15 87.8 160 33.1
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.9e-15 87.8 160 33.8
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.9e-15 87.8 160 33.8
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 1.9e-15 87.8 160 33.8
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.9e-15 87.8 141 31.9
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 1.9e-15 87.8 104 42.3
Mapoly0019s0043 Marchantia polymorpha HOM05D003325 ORTHO05D003852 2.5e-15 87.4 160 31.2
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.3e-15 87.0 156 31.4
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-15 87.0 160 34.4
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 3.3e-15 87.0 134 34.3
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 3.3e-15 87.0 196 28.1
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 5.6e-15 86.3 165 30.3
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 5.6e-15 86.3 156 30.8
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.6e-15 86.3 164 31.1
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.6e-15 86.3 188 30.9
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 7.3e-15 85.9 165 32.7
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 7.3e-15 85.9 161 31.1
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 9.6e-15 85.5 163 31.3
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 2.8e-14 84.0 163 30.7
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 2.8e-14 84.0 161 33.5
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 6.2e-14 82.8 163 30.7
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 6.2e-14 82.8 158 29.7
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 8.1e-14 82.4 163 30.7
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 8.1e-14 82.4 163 30.7
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.1e-14 82.4 159 30.8
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 8.1e-14 82.4 103 37.9
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.1e-13 82.0 155 28.4
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.4e-13 80.9 163 30.7
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 3.1e-13 80.5 139 31.7
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.3e-13 79.7 159 30.2
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 6.9e-13 79.3 155 32.9
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-12 78.2 107 39.3
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-12 78.2 155 32.3
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 7.6e-12 75.9 157 27.4
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.7e-11 74.7 109 34.9
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 4.9e-11 73.2 169 28.4
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 6.4e-11 72.8 168 27.4
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 6.4e-11 72.8 124 33.1
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 8.4e-11 72.4 130 33.1
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 4.6e-09 66.6 166 24.7
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 4.6e-09 66.6 169 27.8
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.0e-09 66.2 98 31.6
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.3e-08 64.3 152 28.3
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 3.0e-08 63.9 178 25.8
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.9e-07 61.2 175 25.7
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-07 60.5 68 47.1
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 1.3e-06 58.5 150 28.7
SEGI_17900 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 2.1e-06 57.8 50 48.0
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 3.7e-06 57.0 61 44.3


User provided reference genes

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