Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.1e-218 763.1 418 100.0
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.3e-155 552.7 303 100.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-58 231.5 427 41.0
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.9e-56 224.2 424 38.7
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.5e-56 223.8 429 39.6
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.0e-54 218.4 434 39.4
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.4e-54 218.0 431 39.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.8e-54 217.6 422 38.6
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 4.0e-54 216.5 414 39.9
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.2e-53 214.9 421 38.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.5e-53 214.5 419 38.9
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.5e-53 214.5 416 38.9
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.4e-53 213.4 419 40.8
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.4e-53 213.0 417 41.0
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 4.4e-53 213.0 421 38.5
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 5.7e-53 212.6 421 38.0
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 9.8e-53 211.8 420 35.5
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.3e-52 211.5 425 37.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 2.2e-52 210.7 421 38.2
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.8e-52 210.3 221 53.8
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.8e-52 210.3 418 38.3
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 3.7e-52 209.9 416 36.8
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.4e-51 208.0 421 39.9
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.4e-51 208.0 416 38.5
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.4e-51 207.2 228 53.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.1e-51 206.8 429 38.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.1e-51 206.8 435 37.9
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.1e-51 206.8 435 37.9
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 5.4e-51 206.1 427 37.2
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 2.0e-50 204.1 441 36.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.7e-50 203.8 212 52.8
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.7e-50 203.8 417 38.6
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.7e-50 203.8 224 50.9
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.5e-50 203.0 240 48.3
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.0e-49 201.8 223 51.6
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.9e-49 200.3 417 36.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.8e-49 199.9 440 36.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.6e-49 198.7 429 37.5
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.5e-48 198.0 426 37.1
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.9e-48 197.6 419 36.8
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.9e-48 197.6 288 42.4
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.5e-48 197.2 420 37.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 7.3e-48 195.7 206 50.5
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 7.3e-48 195.7 453 34.4
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 7.3e-48 195.7 276 43.5
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 9.5e-48 195.3 233 48.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-47 194.9 427 36.3
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 2.1e-47 194.1 423 35.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.8e-47 193.7 436 36.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 8.0e-47 192.2 219 49.3
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 8.0e-47 192.2 412 35.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.0e-46 191.8 421 36.3
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.0e-46 191.8 416 35.1
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.0e-46 191.8 232 49.6
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.0e-46 191.8 410 36.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.4e-46 191.4 441 36.7
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.8e-46 191.0 221 50.2
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.3e-46 190.7 205 50.2
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.3e-46 190.7 206 51.5
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 4.0e-46 189.9 419 36.8
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 4.0e-46 189.9 436 38.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.0e-46 189.9 415 36.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 8.9e-46 188.7 434 38.0
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.0e-45 187.6 426 35.0
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.4e-45 186.8 420 36.4
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 4.4e-45 186.4 421 34.4
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.8e-45 186.0 432 37.3
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 5.8e-45 186.0 415 36.1
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 9.8e-45 185.3 441 36.7
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.3e-44 184.9 424 36.8
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.7e-44 184.5 416 37.7
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.7e-44 183.3 413 36.1
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 4.9e-44 183.0 208 48.1
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.4e-43 181.4 452 34.5
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.4e-43 181.4 212 50.9
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 4.1e-43 179.9 159 56.0
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 5.4e-43 179.5 208 49.0
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 9.2e-43 178.7 447 34.7
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 7.8e-42 175.6 377 35.5
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 7.8e-42 175.6 216 48.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 7.8e-42 175.6 411 34.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.1e-40 171.8 219 47.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.1e-39 167.5 412 34.0
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.7e-39 166.4 271 38.7
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.1e-38 165.2 430 34.4
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.3e-38 164.1 438 34.0
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.3e-36 158.3 304 34.2
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-36 158.3 215 45.6
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.9e-36 157.1 130 58.5
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.1e-35 155.2 599 28.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.1e-35 155.2 157 51.6
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.9e-35 154.5 399 32.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.1e-35 153.3 413 33.9
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 9.2e-35 152.1 207 44.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.1e-34 151.0 416 33.9
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 3.5e-34 150.2 152 53.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.5e-34 150.2 152 52.0
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.0e-33 148.7 152 52.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.0e-33 148.7 152 52.0
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 8.6e-33 145.6 352 36.1
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.5e-32 144.8 166 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 7.3e-32 142.5 155 50.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 4.7e-31 139.8 219 40.6
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-30 138.7 148 51.4
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.7e-28 131.3 431 32.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.9e-28 130.6 207 41.5
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 2.7e-26 124.0 241 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 7.8e-26 122.5 162 42.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.3e-25 120.9 126 49.2
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 6.6e-25 119.4 381 32.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.9e-24 117.9 420 28.8
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 9.5e-24 115.5 91 60.4
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.6e-23 114.8 228 38.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 8.1e-23 112.5 136 45.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 9.9e-21 105.5 138 44.2
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.4e-19 100.9 128 45.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.6e-18 98.2 89 58.4
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.6e-18 96.7 83 60.2
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.0e-17 95.5 77 57.1
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.3e-16 90.1 240 34.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 4.4e-13 80.1 125 37.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.8e-13 79.7 169 36.1
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.7e-12 78.2 235 32.3
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.2e-11 73.9 231 30.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 5.4e-11 73.2 68 55.9
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.2e-10 72.0 124 36.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-09 68.2 147 36.7
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-08 65.5 45 62.2
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.5e-08 64.3 116 34.5
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 5.6e-08 63.2 237 29.1
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-07 60.8 87 43.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.1e-06 58.9 240 29.6
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.4e-06 57.8 56 50.0
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 3.1e-06 57.4 55 54.5
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 9.0e-06 55.8 55 47.3


User provided reference genes

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