Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.3e-99 365.5 183 100.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.1e-19 100.9 66 71.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.0e-19 99.0 79 62.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.0e-18 96.7 66 68.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-18 96.3 76 60.5
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.6e-18 96.3 66 66.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.4e-18 95.9 66 66.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.5e-18 95.5 62 71.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 4.5e-18 95.5 66 68.2
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 5.8e-18 95.1 62 71.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 7.6e-18 94.7 76 60.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 7.6e-18 94.7 62 69.4
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.0e-17 94.4 53 79.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.3e-17 94.0 72 58.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.3e-17 94.0 62 69.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-17 94.0 62 69.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.3e-17 94.0 62 69.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.3e-17 94.0 62 67.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.3e-17 94.0 63 68.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-17 93.6 62 72.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.7e-17 93.6 61 68.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.7e-17 93.6 52 75.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.2e-17 93.2 56 73.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 67.7
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 67.7
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 67.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 67.7
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 67.7
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-17 93.2 62 72.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.2e-17 93.2 52 76.9
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.9e-17 92.8 62 66.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.9e-17 92.8 54 72.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.9e-17 92.8 62 66.1
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.9e-17 92.8 66 65.2
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.9e-17 92.8 72 61.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.8e-17 92.4 72 63.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.8e-17 92.4 72 62.5
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.8e-17 92.4 52 76.9
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 3.8e-17 92.4 52 76.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.9e-17 92.0 54 72.2
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 4.9e-17 92.0 54 72.2
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 4.9e-17 92.0 53 77.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.5e-17 91.7 62 66.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 8.4e-17 91.3 63 66.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.1e-16 90.9 72 58.3
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.1e-16 90.9 72 58.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.1e-16 90.9 66 60.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.1e-16 90.9 62 69.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.4e-16 90.5 62 66.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.9e-16 90.1 65 61.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-16 90.1 52 75.0
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.9e-16 90.1 66 65.2
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.5e-16 89.7 63 65.1
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.5e-16 89.7 60 66.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.2e-16 89.4 65 63.1
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 3.2e-16 89.4 52 75.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.2e-16 89.4 62 69.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 3.2e-16 89.4 62 66.1
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.2e-16 89.0 56 71.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.2e-16 89.0 56 71.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 5.5e-16 88.6 66 59.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.5e-16 88.6 62 67.7
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.5e-16 88.6 72 56.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.5e-16 88.6 62 67.7
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.1e-16 88.2 62 64.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.3e-16 87.8 65 60.0
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.3e-16 87.8 66 65.2
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 9.3e-16 87.8 62 67.7
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-16 87.8 56 69.6
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.3e-16 87.8 73 60.3
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 9.3e-16 87.8 54 68.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.3e-16 87.8 62 62.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-15 87.4 52 71.2
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.2e-15 87.4 69 60.9
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.6e-15 87.0 62 62.9
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.6e-15 87.0 62 62.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.6e-15 87.0 62 62.9
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.1e-15 86.7 65 60.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.1e-15 86.7 72 55.6
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.1e-15 86.7 52 71.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.7e-15 86.3 62 61.3
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.7e-15 86.3 62 61.3
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.7e-15 86.3 62 61.3
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.7e-15 86.3 62 61.3
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.7e-15 86.3 67 62.7
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.5e-15 85.9 56 64.3
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.5e-15 85.9 72 51.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.5e-15 85.9 52 69.2
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 3.5e-15 85.9 64 62.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.5e-15 85.9 66 62.1
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.5e-15 85.9 52 73.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 4.6e-15 85.5 56 64.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.6e-15 85.5 53 67.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.6e-15 85.5 53 67.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.6e-15 85.5 53 67.9
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.6e-15 85.5 72 51.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.6e-15 85.5 52 71.2
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.0e-15 85.1 56 66.1
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.0e-15 85.1 52 69.2
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 6.0e-15 85.1 69 56.5
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 6.0e-15 85.1 74 52.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 7.9e-15 84.7 53 67.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 7.9e-15 84.7 62 66.1
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 7.9e-15 84.7 52 67.3
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 7.9e-15 84.7 52 67.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.3e-14 84.0 56 66.1
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.3e-14 84.0 62 62.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.8e-14 83.6 56 64.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-14 83.6 52 67.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.3e-14 83.2 71 57.7
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.3e-14 83.2 52 71.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.3e-14 83.2 62 67.7
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.3e-14 83.2 52 67.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.3e-14 83.2 52 69.2
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.0e-14 82.8 52 67.3
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 3.0e-14 82.8 52 71.2
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.0e-14 82.8 52 67.3
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 3.9e-14 82.4 52 67.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.9e-14 82.4 52 65.4
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 5.1e-14 82.0 62 66.1
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 5.1e-14 82.0 62 59.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 6.7e-14 81.6 52 67.3
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 8.7e-14 81.3 53 67.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 8.7e-14 81.3 52 65.4
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 8.7e-14 81.3 52 69.2
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.1e-13 80.9 62 59.7
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-13 80.9 51 64.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.5e-13 80.5 52 65.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.9e-13 80.1 52 65.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.9e-13 80.1 74 52.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.9e-13 80.1 70 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 5.7e-13 78.6 62 58.1
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 5.7e-13 78.6 53 66.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 5.7e-13 78.6 89 47.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.7e-13 77.8 54 63.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.7e-13 77.8 61 55.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.3e-12 75.1 53 66.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 8.2e-12 74.7 69 53.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 8.2e-12 74.7 62 59.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.1e-11 74.3 84 48.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.4e-11 73.2 63 57.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.4e-11 73.2 78 48.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 6.9e-11 71.6 59 62.7
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 6.9e-11 71.6 69 52.2
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.0e-11 71.2 52 59.6
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.2e-10 70.9 39 76.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.2e-10 70.9 39 76.9
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.4e-10 69.3 52 59.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 3.4e-10 69.3 87 43.7
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.0e-09 65.5 62 51.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 5.0e-09 65.5 52 57.7
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.0e-09 65.5 103 41.7
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.6e-07 60.5 27 85.2


User provided reference genes

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