Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 9.5e-162 573.5 311 100.0
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 8.1e-36 155.2 77 97.4
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.9e-24 117.5 69 76.8
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 9.3e-24 115.2 72 76.4
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.6e-23 114.4 68 72.1
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.1e-23 114.0 78 66.7
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.1e-23 114.0 78 69.2
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 3.5e-23 113.2 77 67.5
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.6e-23 112.8 67 76.1
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 6.0e-23 112.5 76 65.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 7.9e-23 112.1 69 72.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 7.9e-23 112.1 77 63.6
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.0e-22 111.7 79 68.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-22 111.7 76 67.1
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-22 111.7 77 67.5
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-22 111.7 79 64.6
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-22 111.7 79 64.6
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-22 111.7 79 64.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.3e-22 111.3 78 65.4
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-22 111.3 84 60.7
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-22 110.9 76 63.2
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.7e-22 110.9 80 68.8
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 2.3e-22 110.5 76 65.8
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.3e-22 110.5 76 63.2
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.3e-22 110.5 76 63.2
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 2.3e-22 110.5 77 64.9
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.3e-22 110.5 78 66.7
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.0e-22 110.2 76 63.2
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 3.0e-22 110.2 76 64.5
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.0e-22 110.2 80 70.0
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 3.9e-22 109.8 69 71.0
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 5.1e-22 109.4 78 64.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 5.1e-22 109.4 70 71.4
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 5.1e-22 109.4 77 63.6
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 5.1e-22 109.4 63 71.4
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 6.6e-22 109.0 72 68.1
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 8.7e-22 108.6 80 60.0
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 8.7e-22 108.6 76 63.2
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 8.7e-22 108.6 80 65.0
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 8.7e-22 108.6 80 61.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 8.7e-22 108.6 76 67.1
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 8.7e-22 108.6 72 68.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.1e-21 108.2 81 64.2
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.1e-21 108.2 76 63.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.1e-21 108.2 79 64.6
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.5e-21 107.8 71 69.0
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 2.5e-21 107.1 76 67.1
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.5e-21 107.1 84 61.9
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.5e-21 107.1 76 60.5
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.5e-21 107.1 76 60.5
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.5e-21 107.1 77 62.3
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 3.3e-21 106.7 81 65.4
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 4.3e-21 106.3 76 61.8
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 5.6e-21 105.9 88 59.1
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 5.6e-21 105.9 76 59.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.6e-21 105.9 76 59.2
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.6e-21 105.9 76 61.8
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 5.6e-21 105.9 84 60.7
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 9.6e-21 105.1 84 54.8
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 9.6e-21 105.1 84 54.8
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.3e-20 104.8 74 62.2
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.6e-20 104.4 78 57.7
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.6e-20 104.4 80 63.8
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.1e-20 104.0 72 66.7
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.8e-20 103.6 70 65.7
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.8e-20 103.6 68 61.8
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.8e-20 103.6 70 62.9
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.8e-20 103.6 74 67.6
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.8e-20 103.6 71 67.6
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.6e-20 103.2 76 65.8
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.6e-20 103.2 81 63.0
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.8e-20 102.8 76 63.2
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 6.2e-20 102.4 75 62.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 6.2e-20 102.4 77 64.9
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 8.1e-20 102.1 76 60.5
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 8.1e-20 102.1 69 68.1
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.1e-19 101.7 76 59.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.1e-19 101.7 73 65.8
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.1e-19 101.7 77 62.3
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.4e-19 101.3 76 60.5
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.4e-19 101.3 76 59.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.4e-19 101.3 79 58.2
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.4e-19 101.3 74 58.1
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.4e-19 101.3 80 60.0
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.8e-19 100.9 79 58.2
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.8e-19 100.9 71 66.2
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.8e-19 100.9 76 65.8
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 4.0e-19 99.8 76 61.8
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 4.0e-19 99.8 69 62.3
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 5.3e-19 99.4 70 64.3
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 5.3e-19 99.4 75 58.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 5.3e-19 99.4 73 58.9
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 6.9e-19 99.0 81 53.1
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 6.9e-19 99.0 69 59.4
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 6.9e-19 99.0 71 59.2
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 6.9e-19 99.0 72 59.7
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 9.0e-19 98.6 78 61.5
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 9.0e-19 98.6 70 64.3
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 9.0e-19 98.6 72 61.1
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 9.0e-19 98.6 84 52.4
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-18 98.2 70 60.0
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.2e-18 98.2 74 62.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 1.2e-18 98.2 70 64.3
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.2e-18 98.2 78 64.1
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.5e-18 97.8 76 60.5
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.5e-18 97.8 76 55.3
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.0e-18 97.4 76 56.6
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.0e-18 97.4 72 59.7
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.6e-18 97.1 75 60.0
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.6e-18 97.1 71 60.6
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.6e-18 97.1 72 65.3
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 2.6e-18 97.1 92 55.4
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.4e-18 96.7 72 63.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 3.4e-18 96.7 70 64.3
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.5e-18 96.3 75 58.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 5.8e-18 95.9 64 64.1
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 7.6e-18 95.5 83 56.6
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 7.6e-18 95.5 83 56.6
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 9.9e-18 95.1 99 52.5
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 9.9e-18 95.1 71 60.6
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 9.9e-18 95.1 71 63.4
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.3e-17 94.7 83 55.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.3e-17 94.7 83 56.6
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.3e-17 94.7 83 56.6
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.3e-17 94.7 83 56.6
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.3e-17 94.7 75 58.7
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.7e-17 94.4 80 53.8
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.7e-17 94.4 81 49.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.7e-17 94.4 77 62.3
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.2e-17 94.0 79 55.7
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.9e-17 93.6 77 57.1
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.9e-17 93.6 83 54.2
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.9e-17 93.6 74 56.8
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.8e-17 93.2 77 51.9
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 3.8e-17 93.2 75 56.0
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.9e-17 92.8 77 57.1
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 4.9e-17 92.8 82 53.7
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 6.4e-17 92.4 75 57.3
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 8.4e-17 92.0 58 69.0
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.1e-16 91.7 65 60.0
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.1e-16 91.7 65 60.0
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.1e-16 91.7 65 60.0
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.4e-16 91.3 63 61.9
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.4e-16 91.3 77 55.8
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.9e-16 90.9 65 60.0
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.9e-16 90.9 65 60.0
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.4e-16 90.5 76 51.3
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.2e-15 88.2 76 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.6e-15 87.8 78 55.1
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.6e-15 87.8 76 48.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 2.7e-15 87.0 76 51.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.3e-14 84.7 63 54.0
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.0e-14 83.6 62 56.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.5e-13 81.3 75 53.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.9e-13 80.9 70 47.1
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 4.0e-11 73.2 55 63.6
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.5e-10 69.7 38 76.3
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.1e-08 65.1 61 55.7


User provided reference genes

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