Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12464 Sequoiadendron giganteum HOM05D001647 ORTHO05D000014 1.8e-102 375.9 187 100.0
SEGI_37560 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.7e-17 93.6 142 40.8
SEGI_38033 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.5e-16 89.7 48 79.2
SEGI_07516 Sequoiadendron giganteum HOM05D000634 ORTHO05D000517 3.6e-15 85.9 53 69.8
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 1.1e-08 64.3 125 36.0
SEGI_18049 Sequoiadendron giganteum HOM05D000751 ORTHO05D000889 1.1e-08 64.3 50 58.0
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 2.5e-08 63.2 168 33.9
SEGI_35250 Sequoiadendron giganteum HOM05D000023 ORTHO05D014008 2.5e-08 63.2 54 51.9
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 3.3e-08 62.8 161 33.5
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 4.3e-08 62.4 93 38.7
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 7.3e-08 61.6 71 47.9
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 9.6e-08 61.2 107 37.4
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 1.2e-07 60.8 68 47.1
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 1.2e-07 60.8 67 50.7
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 1.6e-07 60.5 94 39.4
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 2.1e-07 60.1 157 31.8
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 2.1e-07 60.1 90 42.2
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 2.1e-07 60.1 75 46.7
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 2.1e-07 60.1 155 32.3
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 2.8e-07 59.7 63 46.0
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 2.8e-07 59.7 80 45.0
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 3.6e-07 59.3 66 45.5
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.6e-07 59.3 46 52.2
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 4.7e-07 58.9 63 46.0
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 4.7e-07 58.9 89 40.4
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 4.7e-07 58.9 136 32.4
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 4.7e-07 58.9 63 47.6
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 4.7e-07 58.9 68 47.1
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 4.7e-07 58.9 68 47.1
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 4.7e-07 58.9 68 47.1
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 4.7e-07 58.9 67 47.8
ATR0743G047 Amborella trichopoda HOM05D001647 ORTHO05D001191 6.2e-07 58.5 72 44.4
CSS0028879 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 6.2e-07 58.5 65 47.7
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 6.2e-07 58.5 66 45.5
Sp7g10330 Schrenkiella parvula HOM05D001647 ORTHO05D001191 6.2e-07 58.5 71 42.3
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 8.1e-07 58.2 142 31.7
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 8.1e-07 58.2 97 37.1
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 8.1e-07 58.2 74 40.5
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 1.1e-06 57.8 63 46.0
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.1e-06 57.8 83 38.6
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 1.4e-06 57.4 167 32.9
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 1.4e-06 57.4 96 37.5
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 1.4e-06 57.4 66 45.5
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 1.4e-06 57.4 157 31.8
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 1.8e-06 57.0 151 35.8
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 1.8e-06 57.0 163 32.5
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.8e-06 57.0 66 45.5
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 1.8e-06 57.0 89 39.3
Thhalv10025736m.g Eutrema salsugineum HOM05D000793 ORTHO05D001191 2.4e-06 56.6 79 43.0
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 2.4e-06 56.6 109 34.9
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 3.1e-06 56.2 63 47.6
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 3.1e-06 56.2 140 30.7
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 3.1e-06 56.2 138 33.3
PGSC0003DMG400015335 Solanum tuberosum HOM05D001647 ORTHO05D001191 3.1e-06 56.2 149 32.9
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 3.1e-06 56.2 107 36.4
Aqoxy6G01580 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 4.0e-06 55.8 149 34.2
CAN.G1002.19 Capsicum annuum HOM05D001647 ORTHO05D001191 4.0e-06 55.8 142 33.1
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 4.0e-06 55.8 87 41.4
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 4.0e-06 55.8 158 31.6
CARHR218470 Cardamine hirsuta HOM05D001647 ORTHO05D001191 5.2e-06 55.5 91 36.3
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 5.2e-06 55.5 96 37.5
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 5.2e-06 55.5 166 30.7
QL01p055440 Quercus lobata HOM05D001647 ORTHO05D001191 5.2e-06 55.5 157 32.5
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 5.2e-06 55.5 157 32.5
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 6.8e-06 55.1 63 44.4
CSS0025040 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 6.8e-06 55.1 158 32.3
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 6.8e-06 55.1 161 32.3
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 6.8e-06 55.1 137 32.8
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 6.8e-06 55.1 150 32.7
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 6.8e-06 55.1 140 32.1
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 6.8e-06 55.1 67 46.3
HPP92_018918 Vanilla planifolia HOM05D001647 ORTHO05D001191 6.8e-06 55.1 72 40.3
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 8.9e-06 54.7 67 47.8
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 8.9e-06 54.7 149 34.2
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 8.9e-06 54.7 151 34.4
A08p07170 Brassica napus HOM05D001647 ORTHO05D001191 8.9e-06 54.7 69 39.1
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 8.9e-06 54.7 151 34.4
BraA08t32729Z Brassica rapa HOM05D001647 ORTHO05D001191 8.9e-06 54.7 69 39.1
Lj3A23G21 Lonicera japonica HOM05D001647 ORTHO05D001191 8.9e-06 54.7 147 29.9
SEGI_02055 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 8.9e-06 54.7 47 46.8
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 8.9e-06 54.7 152 34.2


User provided reference genes

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