Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 6.1e-118 427.6 224 100.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 2.7e-65 252.7 217 61.8
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 7.8e-65 251.1 214 60.7
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 2.3e-64 249.6 209 61.2
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 3.3e-63 245.7 207 61.4
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.8e-62 242.7 204 62.7
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.8e-62 242.7 204 62.7
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 8.1e-62 241.1 220 59.1
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.8e-61 240.0 209 59.8
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 6.8e-61 238.0 217 58.5
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.0e-60 236.5 204 57.4
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 2.6e-60 236.1 204 59.8
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 8.4e-59 231.1 229 54.1
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.1e-58 230.7 205 59.5
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.1e-58 230.7 205 59.5
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 4.1e-58 228.8 205 59.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 7.1e-58 228.0 217 58.1
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 1.2e-57 227.3 210 56.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.6e-57 226.9 208 57.2
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 2.1e-57 226.5 209 57.9
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.7e-57 226.1 210 58.6
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.0e-57 224.9 215 55.8
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 2.3e-56 223.0 204 55.4
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 5.1e-56 221.9 203 56.7
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 6.6e-56 221.5 205 56.1
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 6.6e-56 221.5 209 56.9
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 8.6e-56 221.1 208 56.7
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.1e-55 220.7 218 55.5
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.5e-55 220.3 209 56.9
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 3.3e-55 219.2 209 55.5
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 5.6e-55 218.4 209 55.5
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 9.6e-55 217.6 208 56.2
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.6e-54 216.9 204 57.4
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.6e-54 216.9 217 53.0
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.6e-54 216.9 203 55.7
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 1.6e-54 216.9 209 56.0
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.6e-54 216.9 209 56.5
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 2.1e-54 216.5 222 52.3
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 2.8e-54 216.1 204 56.9
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 2.8e-54 216.1 213 52.6
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 3.6e-54 215.7 204 56.4
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 8.1e-54 214.5 208 55.3
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.1e-53 214.2 203 56.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 1.1e-53 214.2 208 54.3
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.4e-53 213.8 209 54.5
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.4e-53 213.0 209 55.0
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 3.1e-53 212.6 218 53.2
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 3.1e-53 212.6 209 53.6
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 6.8e-53 211.5 205 54.1
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 8.9e-53 211.1 214 52.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.2e-52 210.7 204 54.9
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 1.2e-52 210.7 204 55.9
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 1.2e-52 210.7 208 54.8
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 2.6e-52 209.5 209 53.1
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 3.4e-52 209.1 215 52.1
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 4.4e-52 208.8 208 53.8
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 7.6e-52 208.0 208 52.4
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.2e-51 206.5 195 55.9
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 4.9e-51 205.3 208 54.3
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 8.4e-51 204.5 204 55.9
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 1.1e-50 204.1 205 54.6
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 4.6e-49 198.7 205 53.2
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 6.0e-49 198.4 209 49.3
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 5.1e-48 195.3 211 53.1
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 5.6e-47 191.8 206 51.5
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.3e-47 191.4 206 51.5
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 9.6e-47 191.0 204 50.5
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 9.6e-47 191.0 211 51.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 1.3e-46 190.7 206 51.0
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.3e-46 190.7 206 51.0
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 2.8e-46 189.5 185 53.5
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 2.8e-46 189.5 218 50.0
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 4.8e-46 188.7 206 51.0
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.1e-45 187.6 206 50.5
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 2.4e-45 186.4 205 49.3
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.5e-44 183.7 220 46.8
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 5.8e-44 181.8 210 47.6
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 7.6e-44 181.4 166 57.8
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 3.8e-43 179.1 209 47.4
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 4.9e-43 178.7 167 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.4e-42 177.2 214 49.1
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.6e-41 173.7 209 46.9
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.6e-41 173.7 209 45.9
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 2.3e-40 169.9 209 45.0
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.0e-40 169.5 217 43.8
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 3.0e-40 169.5 217 44.2
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.6e-40 168.3 189 50.8
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.5e-39 167.2 192 47.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 4.3e-39 165.6 209 46.9
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.8e-38 162.9 204 43.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 3.6e-38 162.5 210 45.7
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.0e-37 159.1 209 44.0
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 5.3e-37 158.7 194 46.9
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 3.4e-36 156.0 233 41.2
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 4.5e-36 155.6 210 44.3
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 2.9e-35 152.9 210 43.8
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.9e-35 152.9 210 43.8
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 5.5e-34 148.7 200 44.0
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 4.6e-33 145.6 141 55.3
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.0e-32 142.9 204 40.2
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 5.6e-31 138.7 204 40.2
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.6e-30 137.1 118 58.5
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 1.3e-27 127.5 96 68.8
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.8e-27 125.9 111 58.6
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 6.5e-27 125.2 124 56.5
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 3.2e-26 122.9 106 58.5
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 2.1e-25 120.2 170 40.0
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 2.1e-25 120.2 170 40.0
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 1.4e-21 107.5 115 46.1
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.4e-21 107.5 115 50.4
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 2.6e-20 103.2 162 35.8
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 2.9e-19 99.8 173 35.3
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 3.8e-19 99.4 108 45.4
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 1.4e-18 97.4 179 35.2
AL3G41550 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.2e-18 95.9 144 40.3
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 3.9e-16 89.4 215 30.2
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 5.1e-16 89.0 96 50.0
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 5.1e-16 89.0 69 69.6
TPR.G860 Trifolium pratense HOM05D003115 ORTHO05D003595 5.7e-15 85.5 91 49.5
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.7e-14 82.8 69 60.9
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.4e-13 80.9 147 36.7
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.0e-12 77.0 63 60.3
Cfa025075 Carpinus fangiana HOM05D003115 ORTHO05D003595 7.7e-12 75.1 215 27.0
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 1.0e-11 74.7 74 55.4
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.0e-11 74.7 67 52.2
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 4.2e-10 69.3 123 35.0
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 3.6e-09 66.2 69 50.7
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 3.6e-09 66.2 69 50.7
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 1.4e-08 64.3 70 51.4
Hma1.2p1_0039F.1_g024570 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.5e-07 60.8 48 56.2
Psat4g000280 Pisum sativum HOM05D003115 ORTHO05D003595 7.4e-07 58.5 67 47.8


User provided reference genes

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