Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12209 Sequoiadendron giganteum HOM05D000068 ORTHO05D004505 2.2e-35 151.8 78 100.0
ATR0827G077 Amborella trichopoda HOM05D000068 ORTHO05D004505 1.2e-15 86.3 62 67.7
Nn4g23472 Nelumbo nucifera HOM05D000068 ORTHO05D004505 2.0e-15 85.5 55 72.7
ATR0827G053 Amborella trichopoda HOM05D000068 ORTHO05D004505 5.7e-15 84.0 62 67.7
CDE09G0567 Ceratophyllum demersum HOM05D000068 ORTHO05D004505 1.3e-14 82.8 69 60.9
CSS0006194 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 3.7e-14 81.3 51 76.5
CSS0036214 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 3.7e-14 81.3 51 76.5
CiPaw.03G087300 Carya illinoinensis HOM05D000068 ORTHO05D004505 2.4e-13 78.6 54 66.7
CiPaw.04G054100 Carya illinoinensis HOM05D000068 ORTHO05D004505 2.4e-13 78.6 59 62.7
TWI34G0290 Tripterygium wilfordii HOM05D000068 ORTHO05D004505 3.2e-13 78.2 59 62.7
Lj4g0022546 Lotus japonicus HOM05D000068 ORTHO05D004505 7.0e-13 77.0 52 73.1
Sc10g0009670 Simmondsia chinensis HOM05D000068 ORTHO05D004505 9.2e-13 76.6 51 70.6
TAR629G1625 Trochodendron aralioides HOM05D000068 ORTHO05D004505 9.2e-13 76.6 57 64.9
Glyma.17G080400 Glycine max HOM05D000068 ORTHO05D004505 1.6e-12 75.9 52 71.2
VMungo1215G0543 Vigna mungo HOM05D000068 ORTHO05D004505 1.6e-12 75.9 48 77.1
MSTRG.11332 Avicennia marina HOM05D000068 ORTHO05D004505 2.7e-12 75.1 59 66.1
CANSAT64G1179 Cannabis sativa HOM05D000068 ORTHO05D004505 2.7e-12 75.1 51 68.6
HPP92_019346 Vanilla planifolia HOM05D000068 ORTHO05D004505 2.7e-12 75.1 48 77.1
Glyma.05G019400 Glycine max HOM05D000068 ORTHO05D004505 3.5e-12 74.7 51 72.5
Actinidia26258 Actinidia chinensis HOM05D000068 ORTHO05D004505 4.6e-12 74.3 51 72.5
Actinidia35044 Actinidia chinensis HOM05D000068 ORTHO05D004505 5.9e-12 73.9 47 74.5
QL02p067219 Quercus lobata HOM05D000068 ORTHO05D004505 5.9e-12 73.9 54 63.0
QL93p0053_1000 Quercus lobata HOM05D000068 ORTHO05D004505 5.9e-12 73.9 54 63.0
GSVIVG01008121001 Vitis vinifera HOM05D000068 ORTHO05D004505 5.9e-12 73.9 48 68.8
Actinidia18979 Actinidia chinensis HOM05D000068 ORTHO05D004505 7.8e-12 73.6 47 72.3
Duzib147G0173 Durio zibethinus HOM05D000068 ORTHO05D004505 1.0e-11 73.2 54 61.1
HanXRQChr15g0489081 Helianthus annuus HOM05D000068 ORTHO05D004505 1.0e-11 73.2 52 63.5
Aqoxy3G00519 Aquilegia oxysepala HOM05D000068 ORTHO05D004505 1.3e-11 72.8 47 74.5
Rhsim08G0075800 Rhododendron simsii HOM05D000068 ORTHO05D004505 1.3e-11 72.8 51 70.6
Thecc.04G098200 Theobroma cacao HOM05D000068 ORTHO05D004505 1.3e-11 72.8 54 59.3
Ca_21761_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004505 1.7e-11 72.4 48 77.1
Dinv34931 Davidia involucrata HOM05D000068 ORTHO05D004505 1.7e-11 72.4 51 68.6
ECA232G3845 Erigeron canadensis HOM05D000068 ORTHO05D004505 1.7e-11 72.4 52 65.4
Eucgr.I02042 Eucalyptus grandis HOM05D000068 ORTHO05D004505 1.7e-11 72.4 54 66.7
Gohir.A07G067200 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.7e-11 72.4 59 57.6
Gorai.001G075900 Gossypium raimondii HOM05D000068 ORTHO05D004505 1.7e-11 72.4 59 57.6
Lalb_Chr13g0302771 Lupinus albus HOM05D000068 ORTHO05D004505 2.3e-11 72.0 48 75.0
Potri.015G059700 Populus trichocarpa HOM05D000068 ORTHO05D004505 2.3e-11 72.0 56 67.9
Potri.015G059800 Populus trichocarpa HOM05D000068 ORTHO05D004505 2.3e-11 72.0 56 67.9
PGR004G2364 Punica granatum HOM05D000068 ORTHO05D004505 2.3e-11 72.0 59 61.0
Gohir.D07G071800 Gossypium hirsutum HOM05D000068 ORTHO05D004505 3.9e-11 71.2 59 55.9
Lsat_1_v5_gn_4_172260 Lactuca sativa HOM05D000068 ORTHO05D004505 3.9e-11 71.2 52 61.5
PSO339G1772 Papaver somniferum HOM05D000068 ORTHO05D004505 3.9e-11 71.2 54 63.0
Phvul.003G183200 Phaseolus vulgaris HOM05D000068 ORTHO05D004505 3.9e-11 71.2 52 69.2
Potri.015G059600 Populus trichocarpa HOM05D000068 ORTHO05D004505 5.0e-11 70.9 55 67.3
QL10p019992 Quercus lobata HOM05D000068 ORTHO05D004505 5.0e-11 70.9 51 62.7
Sabra15G0085000 Salix brachista HOM05D000068 ORTHO05D004505 6.6e-11 70.5 56 66.1
vmacro18139 Vaccinium macrocarpon HOM05D000068 ORTHO05D004505 6.6e-11 70.5 58 60.3
Ciclev10019251m.g Citrus clementina HOM05D000068 ORTHO05D004505 8.6e-11 70.1 58 65.5
Sed0027691 Sechium edule HOM05D000068 ORTHO05D004505 8.6e-11 70.1 51 66.7
Eucgr.K02537 Eucalyptus grandis HOM05D000068 ORTHO05D004505 1.1e-10 69.7 60 63.3
SalBow5G3913 Salvia bowleyana HOM05D000068 ORTHO05D004505 1.1e-10 69.7 48 72.9
ClCG04G011670 Citrullus lanatus HOM05D000068 ORTHO05D004505 1.5e-10 69.3 51 68.6
Hund02568 Selenicereus undatus HOM05D000068 ORTHO05D004505 1.5e-10 69.3 48 66.7
CSS0027570 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 1.9e-10 68.9 47 72.3
Lj5A134G71 Lonicera japonica HOM05D000068 ORTHO05D004505 1.9e-10 68.9 60 55.0
Nitab4.5_0001580g0130 Nicotiana tabacum HOM05D000068 ORTHO05D004505 1.9e-10 68.9 52 63.5
Peaxi162Scf00555g00915 Petunia axillaris HOM05D000068 ORTHO05D004505 1.9e-10 68.9 52 63.5
Atru.chr9.515 Acer truncatum HOM05D000068 ORTHO05D004505 2.5e-10 68.6 59 62.7
MELO3C002042.2 Cucumis melo HOM05D000068 ORTHO05D004505 2.5e-10 68.6 52 67.3
CsaV3_1G006130 Cucumis sativus L. HOM05D000068 ORTHO05D004505 2.5e-10 68.6 52 67.3
Nitab4.5_0001485g0050 Nicotiana tabacum HOM05D000068 ORTHO05D004505 2.5e-10 68.6 66 56.1
Cc00_g03450 Coffea canephora HOM05D000068 ORTHO05D004505 3.3e-10 68.2 55 60.0
Nitab4.5_0007160g0040 Nicotiana tabacum HOM05D000068 ORTHO05D004505 4.3e-10 67.8 66 54.5
Thecc.03G104600 Theobroma cacao HOM05D000068 ORTHO05D004505 4.3e-10 67.8 59 59.3
Cc07_g04380 Coffea canephora HOM05D000068 ORTHO05D004505 5.6e-10 67.4 51 64.7
COL.COLO4_02774 Corchorus olitorius HOM05D000068 ORTHO05D004505 5.6e-10 67.4 54 57.4
Duzib187G1812 Durio zibethinus HOM05D000068 ORTHO05D004505 5.6e-10 67.4 54 57.4
Oeu057200.2 Olea europaea HOM05D000068 ORTHO05D004505 5.6e-10 67.4 47 72.3
Medtr4g109720 Medicago truncatula HOM05D000068 ORTHO05D004505 7.3e-10 67.0 48 70.8
Solyc03g114950.2 Solanum lycopersicum HOM05D000068 ORTHO05D004505 7.3e-10 67.0 66 53.0
Sopen03g034030 Solanum pennellii HOM05D000068 ORTHO05D004505 7.3e-10 67.0 66 53.0
PGSC0003DMG400024532 Solanum tuberosum HOM05D000068 ORTHO05D004505 7.3e-10 67.0 66 53.0
COL.COLO4_24317 Corchorus olitorius HOM05D000068 ORTHO05D004505 9.5e-10 66.6 48 62.5
Sabra18G0048100 Salix brachista HOM05D000068 ORTHO05D004505 9.5e-10 66.6 56 64.3
Gohir.A05G381000 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.2e-09 66.2 54 57.4
Gorai.012G038700 Gossypium raimondii HOM05D000068 ORTHO05D004505 1.2e-09 66.2 54 57.4
Manes.02G056700 Manihot esculenta HOM05D000068 ORTHO05D004505 1.2e-09 66.2 54 59.3
Os03g0755100 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004505 1.2e-09 66.2 57 61.4
Peaxi162Scf00201g00424 Petunia axillaris HOM05D000068 ORTHO05D004505 1.2e-09 66.2 66 54.5
Potri.018G051800 Populus trichocarpa HOM05D000068 ORTHO05D004505 1.2e-09 66.2 51 66.7
TPR.G1996 Trifolium pratense HOM05D000068 ORTHO05D004505 1.6e-09 65.9 48 66.7
CSS0014152 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 2.1e-09 65.5 47 68.1
Mapoly0075s0079 Marchantia polymorpha HOM05D000068 ORTHO05D004505 2.8e-09 65.1 56 57.1
unitig_32.g10756 Utricularia gibba HOM05D000068 ORTHO05D004505 2.8e-09 65.1 47 63.8
arahy.Tifrunner.gnm1.ann1.6K2AQG Arachis hypogaea HOM05D000068 ORTHO05D004505 3.6e-09 64.7 48 68.8
arahy.Tifrunner.gnm1.ann1.ZGC9F0 Arachis hypogaea HOM05D000068 ORTHO05D004505 3.6e-09 64.7 48 68.8
DCAR_011561 Daucus carota HOM05D000068 ORTHO05D004505 4.7e-09 64.3 47 70.2
PGR044G2190 Punica granatum HOM05D000068 ORTHO05D004505 4.7e-09 64.3 47 68.1
Thhalv10027684m.g Eutrema salsugineum HOM05D000068 ORTHO05D004505 6.2e-09 63.9 60 56.7
Zm00001eb214670 Zea mays HOM05D000068 ORTHO05D004505 8.0e-09 63.5 48 64.6
Ah.11g047580 Amaranthus hybridus HOM05D000068 ORTHO05D004505 1.0e-08 63.2 47 72.3
EL10Ac5g11160 Beta vulgaris HOM05D000068 ORTHO05D004505 1.0e-08 63.2 48 66.7
CARHR263390 Cardamine hirsuta HOM05D000068 ORTHO05D004505 1.0e-08 63.2 47 68.1
Gohir.D04G034400 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.0e-08 63.2 54 55.6
THA.LOC104822820 Tarenaya hassleriana HOM05D000068 ORTHO05D004505 1.0e-08 63.2 61 54.1
Sp7g02870 Schrenkiella parvula HOM05D000068 ORTHO05D004505 1.4e-08 62.8 59 57.6
Psat4g046360 Pisum sativum HOM05D000068 ORTHO05D004505 1.8e-08 62.4 48 70.8
Potri.017G097200 Populus trichocarpa HOM05D000068 ORTHO05D004505 1.8e-08 62.4 63 49.2
Sabra17G0084600 Salix brachista HOM05D000068 ORTHO05D004505 1.8e-08 62.4 61 47.5
SabraUnG0001800 Salix brachista HOM05D000068 ORTHO05D004505 1.8e-08 62.4 61 47.5
AT5G39040 Arabidopsis thaliana HOM05D000068 ORTHO05D004505 2.3e-08 62.0 48 64.6
Lsat_1_v5_gn_8_42700 Lactuca sativa HOM05D000068 ORTHO05D004505 2.3e-08 62.0 47 66.0
AL7G51410 Arabidopsis lyrata HOM05D000068 ORTHO05D004505 3.1e-08 61.6 47 66.0
Carub.0007s3682 Capsella rubella HOM05D000068 ORTHO05D004505 3.1e-08 61.6 47 66.0
HanXRQChr08g0212891 Helianthus annuus HOM05D000068 ORTHO05D004505 5.2e-08 60.8 46 65.2
unitig_748.g8419 Utricularia gibba HOM05D000068 ORTHO05D004505 5.2e-08 60.8 47 59.6
GSVIVG01032898001 Vitis vinifera HOM05D000068 ORTHO05D004505 6.8e-08 60.5 49 59.2
ECA233G1111 Erigeron canadensis HOM05D000068 ORTHO05D004505 8.9e-08 60.1 46 60.9
Pp3c2_36840 Physcomitrium patens HOM05D000068 ORTHO05D004505 1.5e-07 59.3 47 68.1
CAN.G1228.8 Capsicum annuum HOM05D000068 ORTHO05D004505 2.0e-07 58.9 51 58.8
DCAR_023160 Daucus carota HOM05D000068 ORTHO05D004505 2.6e-07 58.5 47 61.7
SGA_v2.0_scaffold733G53532 Striga asiatica HOM05D000068 ORTHO05D004505 2.6e-07 58.5 48 58.3
SMO134G0255 Selaginella moellendorffii HOM05D000068 ORTHO05D004505 3.4e-07 58.2 47 68.1
Aa31LG9G16750 Aethionema arabicum HOM05D000068 ORTHO05D004505 9.8e-07 56.6 47 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1927 Anthoceros agrestis HOM05D000068 ORTHO05D004505 1.3e-06 56.2 52 57.7
Hma1.2p1_0322F.1_g124590 Hydrangea macrophylla HOM05D000068 ORTHO05D004505 2.9e-06 55.1 39 66.7
BcaB06g27263 Brassica carinata HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
BcaC02g09680 Brassica carinata HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
A04p11850 Brassica napus HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
C04p45520 Brassica napus HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
BolC4t26136H Brassica oleracea HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
BraA04t16851Z Brassica rapa HOM05D000068 ORTHO05D004505 4.9e-06 54.3 38 68.4
Duzib264G0257 Durio zibethinus HOM05D000068 ORTHO05D004505 6.4e-06 53.9 52 53.8


User provided reference genes

Program Settings