Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.3e-41 172.6 85 100.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 8.7e-25 116.7 79 68.4
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 5.1e-09 64.3 51 64.7
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-08 63.2 51 62.7
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.5e-08 62.8 51 58.8
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.9e-08 62.4 73 49.3
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.9e-08 62.4 73 49.3
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.9e-08 62.4 73 49.3
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-08 62.4 54 57.4
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 2.5e-08 62.0 50 60.0
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 3.3e-08 61.6 53 58.5
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.3e-08 61.6 53 58.5
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.3e-08 61.6 53 58.5
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.3e-08 61.6 53 58.5
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 3.3e-08 61.6 54 53.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 3.3e-08 61.6 51 60.8
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 3.3e-08 61.6 51 58.8
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-08 61.6 69 50.7
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.3e-08 61.6 53 58.5
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 4.3e-08 61.2 54 53.7
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 4.3e-08 61.2 52 59.6
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 4.3e-08 61.2 54 55.6
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 5.7e-08 60.8 66 48.5
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 7.4e-08 60.5 50 60.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 7.4e-08 60.5 50 60.0
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.4e-08 60.5 53 54.7
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 9.7e-08 60.1 54 53.7
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 9.7e-08 60.1 52 57.7
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 9.7e-08 60.1 70 47.1
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.3e-07 59.7 53 56.6
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.3e-07 59.7 53 54.7
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.3e-07 59.7 53 56.6
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-07 59.7 50 58.0
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.3e-07 59.7 53 58.5
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.7e-07 59.3 52 57.7
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.7e-07 59.3 52 57.7
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.7e-07 59.3 53 54.7
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.7e-07 59.3 53 54.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.7e-07 59.3 54 53.7
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.7e-07 59.3 52 55.8
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.7e-07 59.3 52 55.8
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.7e-07 59.3 52 55.8
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.7e-07 59.3 53 54.7
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.7e-07 59.3 51 56.9
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.7e-07 59.3 50 60.0
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.7e-07 59.3 50 60.0
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.7e-07 59.3 50 60.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.7e-07 59.3 48 62.5
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.7e-07 59.3 51 58.8
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.7e-07 59.3 48 62.5
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.7e-07 59.3 51 56.9
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.7e-07 59.3 49 61.2
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 2.2e-07 58.9 50 60.0
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.2e-07 58.9 50 60.0
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 2.2e-07 58.9 50 60.0
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 2.2e-07 58.9 50 60.0
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 2.2e-07 58.9 66 50.0
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.8e-07 58.5 50 60.0
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 2.8e-07 58.5 50 58.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.8e-07 58.5 48 62.5
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 3.7e-07 58.2 54 55.6
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-07 58.2 66 48.5
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 3.7e-07 58.2 50 56.0
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.7e-07 58.2 48 62.5
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.7e-07 58.2 51 54.9
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 3.7e-07 58.2 50 56.0
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.7e-07 58.2 51 56.9
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-07 57.8 51 54.9
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 4.8e-07 57.8 50 56.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 4.8e-07 57.8 51 52.9
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.3e-07 57.4 49 57.1
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 6.3e-07 57.4 53 54.7
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 6.3e-07 57.4 49 57.1
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 6.3e-07 57.4 51 58.8
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.3e-07 57.4 48 60.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 8.2e-07 57.0 53 54.7
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.2e-07 57.0 48 58.3
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.2e-07 57.0 51 56.9
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 8.2e-07 57.0 50 50.0
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 8.2e-07 57.0 48 56.2
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 8.2e-07 57.0 48 58.3
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.1e-06 56.6 66 48.5
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-06 56.6 54 50.0
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-06 56.6 47 59.6
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.1e-06 56.6 51 56.9
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-06 56.6 47 59.6
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-06 56.6 47 59.6
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.1e-06 56.6 67 40.3
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.4e-06 56.2 47 61.7
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.4e-06 56.2 48 58.3
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.4e-06 56.2 48 58.3
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.4e-06 56.2 54 51.9
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.4e-06 56.2 52 50.0
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-06 55.8 67 43.3
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.8e-06 55.8 48 56.2
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.4e-06 55.5 52 48.1
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.4e-06 55.5 48 58.3
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.1e-06 55.1 48 56.2
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 3.1e-06 55.1 49 53.1
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 3.1e-06 55.1 48 54.2
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 4.1e-06 54.7 55 52.7
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 5.3e-06 54.3 47 57.4
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.3e-06 54.3 60 48.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 6.9e-06 53.9 53 54.7
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 9.1e-06 53.5 41 63.4
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 9.1e-06 53.5 47 57.4
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 9.1e-06 53.5 47 53.2


User provided reference genes

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