Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11854 Sequoiadendron giganteum HOM05D005055 ORTHO05D006327 1.7e-137 492.7 242 100.0
SEGI_34325 Sequoiadendron giganteum HOM05D005055 ORTHO05D006327 1.3e-94 350.1 172 100.0
GSVIVG01014230001 Vitis vinifera HOM05D005055 ORTHO05D006327 8.5e-49 198.0 172 52.9
ATR0602G274 Amborella trichopoda HOM05D005055 ORTHO05D006327 1.1e-48 197.6 174 54.6
Oeu025338.1 Olea europaea HOM05D005055 ORTHO05D006327 4.2e-48 195.7 176 53.4
QL08p026888 Quercus lobata HOM05D005055 ORTHO05D006327 7.2e-48 194.9 213 47.4
arahy.Tifrunner.gnm1.ann1.254HEG Arachis hypogaea HOM05D005055 ORTHO05D006327 9.4e-48 194.5 172 52.3
arahy.Tifrunner.gnm1.ann1.1K9JH7 Arachis hypogaea HOM05D005055 ORTHO05D006327 1.2e-47 194.1 172 52.3
Rhsim06G0205400 Rhododendron simsii HOM05D005055 ORTHO05D006327 1.2e-47 194.1 214 46.7
MD11G1259500 Malus domestica HOM05D005055 ORTHO05D006327 1.6e-47 193.7 172 52.3
MBI06_g18006_MAGBIO Magnolia biondii HOM05D005055 ORTHO05D006327 6.1e-47 191.8 172 52.9
CiPaw.11G163000 Carya illinoinensis HOM05D005055 ORTHO05D006327 1.0e-46 191.0 172 54.1
Lalb_Chr25g0285991 Lupinus albus HOM05D005055 ORTHO05D006327 1.4e-46 190.7 216 46.8
Phvul.005G067800 Phaseolus vulgaris HOM05D005055 ORTHO05D006327 1.4e-46 190.7 173 52.6
Potri.001G376600 Populus trichocarpa HOM05D005055 ORTHO05D006327 1.4e-46 190.7 172 55.2
FAN25G1310 Fragaria x ananassa HOM05D005055 ORTHO05D006327 1.8e-46 190.3 174 52.3
Lj3g0015470 Lotus japonicus HOM05D005055 ORTHO05D006327 1.8e-46 190.3 227 45.4
Sabra16G0248000 Salix brachista HOM05D005055 ORTHO05D006327 1.8e-46 190.3 172 53.5
Cc05_g11380 Coffea canephora HOM05D005055 ORTHO05D006327 2.3e-46 189.9 172 53.5
FvH4_3g18660 Fragaria vesca HOM05D005055 ORTHO05D006327 2.3e-46 189.9 172 52.3
Peaxi162Scf01503g00020 Petunia axillaris HOM05D005055 ORTHO05D006327 2.3e-46 189.9 173 52.6
FAN21G0251 Fragaria x ananassa HOM05D005055 ORTHO05D006327 3.0e-46 189.5 174 52.3
MELO3C016098.2 Cucumis melo HOM05D005055 ORTHO05D006327 5.1e-46 188.7 176 50.0
VMungo1080G1419 Vigna mungo HOM05D005055 ORTHO05D006327 5.1e-46 188.7 175 52.0
Actinidia12556 Actinidia chinensis HOM05D005055 ORTHO05D006327 6.7e-46 188.3 216 47.2
CsaV3_4G008350 Cucumis sativus L. HOM05D005055 ORTHO05D006327 6.7e-46 188.3 176 50.0
Sed0010915 Sechium edule HOM05D005055 ORTHO05D006327 6.7e-46 188.3 176 51.1
Eucgr.F01210 Eucalyptus grandis HOM05D005055 ORTHO05D006327 8.8e-46 188.0 173 51.4
Nn1g04357 Nelumbo nucifera HOM05D005055 ORTHO05D006327 1.1e-45 187.6 172 51.2
RcHm_v2.0_Chr5g0031481 Rosa chinensis HOM05D005055 ORTHO05D006327 1.1e-45 187.6 172 51.2
CANSAT35G0899 Cannabis sativa HOM05D005055 ORTHO05D006327 1.5e-45 187.2 172 50.0
Manes.15G092000 Manihot esculenta HOM05D005055 ORTHO05D006327 2.0e-45 186.8 174 50.0
TPR.G9221 Trifolium pratense HOM05D005055 ORTHO05D006327 2.0e-45 186.8 175 52.0
Atru.chr2.2244 Acer truncatum HOM05D005055 ORTHO05D006327 2.5e-45 186.4 176 51.1
AUR62019538 Chenopodium quinoa HOM05D005055 ORTHO05D006327 3.3e-45 186.0 225 45.8
Glyma.13G271500 Glycine max HOM05D005055 ORTHO05D006327 3.3e-45 186.0 175 53.7
RcHm_v2.0_Chr7g0217341 Rosa chinensis HOM05D005055 ORTHO05D006327 3.3e-45 186.0 172 51.2
Sopen12g005980 Solanum pennellii HOM05D005055 ORTHO05D006327 3.3e-45 186.0 172 48.3
Cpa.g.sc131.64 Carica papaya HOM05D005055 ORTHO05D006327 4.3e-45 185.7 178 52.8
Haze_09351 Corylus avellana HOM05D005055 ORTHO05D006327 4.3e-45 185.7 173 51.4
PSO782G0219 Papaver somniferum HOM05D005055 ORTHO05D006327 4.3e-45 185.7 172 52.9
PGR083G1414 Punica granatum HOM05D005055 ORTHO05D006327 4.3e-45 185.7 179 53.1
A03p09780 Brassica napus HOM05D005055 ORTHO05D006327 5.7e-45 185.3 172 49.4
Lj1A833T50 Lonicera japonica HOM05D005055 ORTHO05D006327 5.7e-45 185.3 173 52.0
Solyc12g014190.2 Solanum lycopersicum HOM05D005055 ORTHO05D006327 5.7e-45 185.3 172 47.7
Nitab4.5_0000035g0040 Nicotiana tabacum HOM05D005055 ORTHO05D006327 7.4e-45 184.9 173 50.9
PGSC0003DMG400015380 Solanum tuberosum HOM05D005055 ORTHO05D006327 9.7e-45 184.5 172 47.7
PSO063G4771 Papaver somniferum HOM05D005055 ORTHO05D006327 1.3e-44 184.1 172 52.9
BcaC03g13727 Brassica carinata HOM05D005055 ORTHO05D006327 1.7e-44 183.7 176 50.0
BolC2t07004H Brassica oleracea HOM05D005055 ORTHO05D006327 1.7e-44 183.7 176 50.0
ClCG07G009980 Citrullus lanatus HOM05D005055 ORTHO05D006327 1.7e-44 183.7 176 50.0
Medtr2g078120 Medicago truncatula HOM05D005055 ORTHO05D006327 1.7e-44 183.7 175 49.7
Psat5g239800 Pisum sativum HOM05D005055 ORTHO05D006327 2.2e-44 183.3 172 48.3
HanXRQChr13g0389111 Helianthus annuus HOM05D005055 ORTHO05D006327 2.8e-44 183.0 172 51.2
AUR62036100 Chenopodium quinoa HOM05D005055 ORTHO05D006327 3.7e-44 182.6 172 50.6
Sp6g24360 Schrenkiella parvula HOM05D005055 ORTHO05D006327 3.7e-44 182.6 172 50.0
CARHR192800 Cardamine hirsuta HOM05D005055 ORTHO05D006327 6.3e-44 181.8 172 49.4
A02p05980 Brassica napus HOM05D005055 ORTHO05D006327 8.2e-44 181.4 177 49.7
BraA02t05550Z Brassica rapa HOM05D005055 ORTHO05D006327 8.2e-44 181.4 177 49.7
BraA03t10293Z Brassica rapa HOM05D005055 ORTHO05D006327 8.2e-44 181.4 172 49.4
Ciclev10008222m.g Citrus clementina HOM05D005055 ORTHO05D006327 8.2e-44 181.4 175 49.7
Hund02369 Selenicereus undatus HOM05D005055 ORTHO05D006327 8.2e-44 181.4 172 51.2
Thecc.07G105000 Theobroma cacao HOM05D005055 ORTHO05D006327 8.2e-44 181.4 172 50.0
TAR629G2461 Trochodendron aralioides HOM05D005055 ORTHO05D006327 8.2e-44 181.4 172 51.7
ECA240G2410 Erigeron canadensis HOM05D005055 ORTHO05D006327 1.4e-43 180.6 175 50.3
RcHm_v2.0_Chr3g0490501 Rosa chinensis HOM05D005055 ORTHO05D006327 1.8e-43 180.3 170 50.0
Duzib213G0103 Durio zibethinus HOM05D005055 ORTHO05D006327 2.4e-43 179.9 172 48.8
C03p11360 Brassica napus HOM05D005055 ORTHO05D006327 4.1e-43 179.1 172 48.8
BcaB05g22884 Brassica carinata HOM05D005055 ORTHO05D006327 5.3e-43 178.7 173 49.7
Prupe.4G170400 Prunus persica HOM05D005055 ORTHO05D006327 5.3e-43 178.7 213 44.1
CAN.G292.8 Capsicum annuum HOM05D005055 ORTHO05D006327 6.9e-43 178.3 173 48.0
BcaB01g04815 Brassica carinata HOM05D005055 ORTHO05D006327 9.1e-43 177.9 172 48.3
Aa31sc170G10 Aethionema arabicum HOM05D005055 ORTHO05D006327 1.2e-42 177.6 172 47.1
BNapus_Darmor_BZH_scaffold_38p01860 Brassica napus HOM05D005055 ORTHO05D006327 1.2e-42 177.6 177 49.2
RcHm_v2.0_Chr0c28g0501011 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-42 177.2 170 49.4
RcHm_v2.0_Chr7g0243611 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-42 177.2 170 49.4
Sc16g0007450 Simmondsia chinensis HOM05D005055 ORTHO05D006327 1.5e-42 177.2 177 48.6
THA.LOC104799653 Tarenaya hassleriana HOM05D005055 ORTHO05D006327 1.5e-42 177.2 213 43.7
BolC3t13609H Brassica oleracea HOM05D005055 ORTHO05D006327 2.6e-42 176.4 172 48.3
Thhalv10013462m.g Eutrema salsugineum HOM05D005055 ORTHO05D006327 2.6e-42 176.4 176 48.9
AT5G20040 Arabidopsis thaliana HOM05D005055 ORTHO05D006327 4.5e-42 175.6 177 49.2
Carub.0006s1841 Capsella rubella HOM05D005055 ORTHO05D006327 5.9e-42 175.3 172 47.7
RcHm_v2.0_Chr1g0325431 Rosa chinensis HOM05D005055 ORTHO05D006327 1.0e-41 174.5 178 46.6
CDE10G0422 Ceratophyllum demersum HOM05D005055 ORTHO05D006327 1.3e-41 174.1 173 49.1
MD03G1240200 Malus domestica HOM05D005055 ORTHO05D006327 1.3e-41 174.1 160 52.5
MSTRG.6806 Avicennia marina HOM05D005055 ORTHO05D006327 2.2e-41 173.3 215 43.3
Gohir.A04G038500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 2.2e-41 173.3 172 47.7
Aqoxy4G00472 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 2.9e-41 172.9 177 49.2
Ah.06g185120 Amaranthus hybridus HOM05D005055 ORTHO05D006327 3.8e-41 172.6 172 48.3
Cfa019592 Carpinus fangiana HOM05D005055 ORTHO05D006327 8.5e-41 171.4 153 52.9
Gohir.D05G344500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 1.1e-40 171.0 172 47.7
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 1.4e-40 170.6 166 47.6
AL6G31580 Arabidopsis lyrata HOM05D005055 ORTHO05D006327 1.9e-40 170.2 172 48.3
Gorai.009G372500 Gossypium raimondii HOM05D005055 ORTHO05D006327 1.9e-40 170.2 172 47.1
SGA_v2.0_scaffold73G24201 Striga asiatica HOM05D005055 ORTHO05D006327 3.2e-40 169.5 174 47.7
Nitab4.5_0005440g0050 Nicotiana tabacum HOM05D005055 ORTHO05D006327 7.2e-40 168.3 203 43.3
SalBow8G2403 Salvia bowleyana HOM05D005055 ORTHO05D006327 1.6e-39 167.2 218 41.7
DCAR_013144 Daucus carota HOM05D005055 ORTHO05D006327 3.6e-39 166.0 182 46.7
HPP92_012839 Vanilla planifolia HOM05D005055 ORTHO05D006327 1.0e-38 164.5 172 47.1
unitig_85.g27415 Utricularia gibba HOM05D005055 ORTHO05D006327 2.3e-38 163.3 178 45.5
unitig_86.g29833 Utricularia gibba HOM05D005055 ORTHO05D006327 2.3e-38 163.3 178 45.5
Dinv14969 Davidia involucrata HOM05D005055 ORTHO05D006327 2.6e-37 159.8 172 48.3
Mapoly0033s0012 Marchantia polymorpha HOM05D005055 ORTHO05D006327 9.7e-37 157.9 176 47.7
Migut.M00745 Erythranthe guttata HOM05D005055 ORTHO05D006327 8.2e-36 154.8 162 48.1
EL10Ac4g08316 Beta vulgaris HOM05D005055 ORTHO05D006327 1.4e-35 154.1 136 52.2
RcHm_v2.0_Chr5g0052511 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-33 147.5 146 47.9
Ca_04006_v3 Cicer arietinum L. HOM05D005055 ORTHO05D006327 5.0e-33 145.6 173 44.5
SMO116G0058 Selaginella moellendorffii HOM05D005055 ORTHO05D006327 4.2e-32 142.5 179 45.3
AagrBONN_evm.TU.Sc2ySwM_362.390 Anthoceros agrestis HOM05D005055 ORTHO05D006327 9.4e-32 141.4 171 42.7
vmacro11912 Vaccinium macrocarpon HOM05D005055 ORTHO05D006327 1.2e-31 141.0 184 43.5
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 2.7e-31 139.8 172 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2293 Anthoceros agrestis HOM05D005055 ORTHO05D006327 3.6e-31 139.4 172 43.6
Lsat_1_v5_gn_9_99580 Lactuca sativa HOM05D005055 ORTHO05D006327 2.6e-29 133.3 132 50.0
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 1.8e-27 127.1 202 36.6
Pp3c3_37040 Physcomitrium patens HOM05D005055 ORTHO05D006327 7.0e-27 125.2 173 41.0
Mapoly0012s0089 Marchantia polymorpha HOM05D005055 ORTHO05D006327 8.5e-25 118.2 174 39.7
Pp3c27_70 Physcomitrium patens HOM05D005055 ORTHO05D006327 9.4e-24 114.8 169 37.9
Pp3c5_9400 Physcomitrium patens HOM05D005055 ORTHO05D006327 9.4e-24 114.8 174 39.7
Zm00001eb271810 Zea mays HOM05D005055 ORTHO05D006327 9.4e-24 114.8 172 34.9
Pp3c16_6080 Physcomitrium patens HOM05D005055 ORTHO05D006327 1.2e-23 114.4 177 39.5
RcHm_v2.0_Chr0c28g0500971 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-20 104.4 116 44.0
RcHm_v2.0_Chr7g0243571 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-20 104.4 116 44.0
PRCOL_00003063 Prasinoderma coloniale HOM05D005055 ORTHO05D006327 2.2e-20 103.6 202 34.2
RcHm_v2.0_Chr0c28g0501061 Rosa chinensis HOM05D005055 ORTHO05D006327 2.8e-20 103.2 116 43.1
Pp3c6_21360 Physcomitrium patens HOM05D005055 ORTHO05D006327 4.8e-20 102.4 176 35.8
AagrBONN_evm.TU.Sc2ySwM_362.2160 Anthoceros agrestis HOM05D005055 ORTHO05D006327 9.1e-19 98.2 176 36.4
Aqoxy3G02852 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 6.1e-15 85.5 172 31.4
MCO11G386 Micromonas commoda HOM05D005055 ORTHO05D006327 1.8e-14 84.0 178 30.9
Cre17.g717350 Chlamydomonas reinhardtii HOM05D005055 ORTHO05D006327 4.9e-12 75.9 152 32.2
Pp3c23_12150 Physcomitrium patens HOM05D005055 ORTHO05D006327 7.7e-10 68.6 86 43.0
Pp3c23_12330 Physcomitrium patens HOM05D005055 ORTHO05D006327 7.7e-10 68.6 86 43.0
Pp3c23_12370 Physcomitrium patens HOM05D005055 ORTHO05D006327 7.7e-10 68.6 86 43.0
RcHm_v2.0_Chr6g0273141 Rosa chinensis HOM05D005055 ORTHO05D006327 6.6e-09 65.5 71 43.7
BcaNung05985 Brassica carinata HOM05D005055 ORTHO05D031968 8.6e-09 65.1 44 63.6
SEGI_36123 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 3.3e-08 63.2 33 87.9


User provided reference genes

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